Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., pseudouridine synthase, RluA family from Dechlorosoma suillum PS

 Score =  107 bits (266), Expect = 4e-28
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 24/230 (10%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFP--LHRLDRPTSG 59
           L ++Y+D+ L+AVNKPAG+ VH        +  V++ LR Q  Q       HRLDR TSG
Sbjct: 95  LPLLYEDDALLAVNKPAGIAVHGG---SGVSFGVIEALRHQRPQAKLLELAHRLDRETSG 151

Query: 60  VLVFALSSQIASEVMPMF----ANHEMEKTYHAIVRG-WIEEANVLDYPLKEELDKIADK 114
           +L+ A      + +  MF    A    +K Y   V+G W++        L + L    ++
Sbjct: 152 ILLVAKKRSALTALHDMFREGGAGRGADKRYLVAVQGRWMDPLRHCRQALHKYLLDNGER 211

Query: 115 FAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHP 174
             + D E + + T +R +A+ +           R+ L+E + K+GR HQ+R H+AHL +P
Sbjct: 212 RVRVDPEGKPSHTVFRLVARWQ-----------RFSLLEAELKSGRTHQIRVHLAHLGYP 260

Query: 175 IVGDTTHGDGVHNR-LFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGL 223
           I+GD  +GD   NR L RE    +R+ LHA  +RF HP T++ + + A L
Sbjct: 261 ILGDDKYGDFALNRELQRE--GLKRMFLHAWRMRFPHPLTKEAMSLEAPL 308