Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 99.8 bits (247), Expect = 4e-26
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 27/237 (11%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWL-DKHETEFVMQTLRDQIGQ--HVF--PLHRLDRP 56
           + +VY+D +++ VNK A  +V      D   +E V Q L+++  +  +VF    HRLDRP
Sbjct: 1   MTVVYEDNHIIVVNKTASEIVQADKTGDTPLSETVKQYLKEKYQKPGNVFIGVTHRLDRP 60

Query: 57  TSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIE--EANVLDYPLKEELDKIADK 114
            SG+++FA +S+  + +  MF   E++KTY A+V+   +  E  ++ Y  + E    +  
Sbjct: 61  VSGLVIFAKTSKALTRLNEMFRTSEVKKTYWAVVKNAPKEPEGELVHYLARNEKQNKSFA 120

Query: 115 FAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHP 174
           + K+   ++ A+  YR +   E            Y L+E+  KTGR HQ+R  +A +  P
Sbjct: 121 YDKEVPNSKKAILNYRLIGHSE-----------NYYLLEVDLKTGRHHQIRCQLAKMGCP 169

Query: 175 IVGDTTHGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLDE--VWQG 229
           I GD  +G    N           + LHA ++RF+HP +++ + + A L E  +W+G
Sbjct: 170 IKGDLKYGAPRSN-------PDGSICLHARKVRFIHPVSKELIELEAPLPEGNLWKG 219