Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., tRNA pseudouridine synthase C (RefSeq) from Shewanella sp. ANA-3

 Score =  295 bits (756), Expect = 5e-85
 Identities = 140/240 (58%), Positives = 177/240 (73%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVL 61
           L ++YQDE+LVA++KPAG+LVHRS+L + E  F MQ  RD +G HVFP+HRLDRPTSGVL
Sbjct: 30  LRVLYQDEHLVAIHKPAGLLVHRSYLARRERFFAMQLTRDLVGCHVFPVHRLDRPTSGVL 89

Query: 62  VFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEANVLDYPLKEELDKIADKFAKQDKE 121
           +FA SS++A+ +   FANH +EK Y A+VRG + E+ VLDY LK ELD++ADKFA QDK 
Sbjct: 90  LFAKSSEVANALCEQFANHSIEKQYLALVRGNMHESGVLDYALKVELDEVADKFANQDKA 149

Query: 122 AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTH 181
           AQ AVT Y PL   E+P  +G++AT+R+ L+++ PKTGRKHQLRRHMAHLRHPI+GDTTH
Sbjct: 150 AQDAVTQYEPLLNTEIPYPSGRYATSRFALVKLSPKTGRKHQLRRHMAHLRHPIIGDTTH 209

Query: 182 GDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLDEVWQGLLSEFGWQESLL 241
           GDG  N  FR HF   RL L A +L F HP TQ  L I   L+  W+ + S  GW ++ L
Sbjct: 210 GDGKQNAFFRTHFDINRLWLIAKKLTFTHPVTQARLSIETELEPEWETVFSGLGWDDAAL 269