Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., pseudouridine synthase (RefSeq) from Shewanella sp. ANA-3

 Score =  102 bits (255), Expect = 5e-27
 Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 32/220 (14%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFP----LHRLDRPT 57
           L++ YQD  L+ +NKP+G+L +      H  +  +  L     Q ++P    +HRLD  T
Sbjct: 14  LDLRYQDRDLIIINKPSGLLSNPGRA-AHTFDCALTRL-----QRLYPDTILVHRLDCAT 67

Query: 58  SGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWI-EEANVLDYPLKEELDKIADKFA 116
           SG++VFA + +  S++   F + + EK Y A V G I ++A ++D  +  + +    +  
Sbjct: 68  SGIMVFARNKKAESQLKTQFQDRQNEKVYIAEVMGGIAKDAGIIDLAIAPDPEHPPYQKT 127

Query: 117 KQDKEA--QSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHP 174
           +    A  +SA+T YR L + E              L+E+ P+TGR HQLR HM  L HP
Sbjct: 128 QTPGTAGAKSALTHYRVLERRE-----------NSTLVELTPQTGRTHQLRVHMLALGHP 176

Query: 175 IVGDTTHGDGVHNRLFREHFSAQ-RLMLHASELRFMHPYT 213
           I+GD  +GD        E   A+ RL LHA  LRF HPY+
Sbjct: 177 ILGDEFYGDD-------EVIKARPRLCLHAQSLRFTHPYS 209