Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., ribosomal large subunit pseudouridine synthase A (RefSeq) from Shewanella sp. ANA-3

 Score =  102 bits (254), Expect = 6e-27
 Identities = 74/222 (33%), Positives = 111/222 (50%), Gaps = 23/222 (10%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVL 61
           L+++YQD+ ++ VNKP+G+L        H      +   +    H   +HRLD  TSGV+
Sbjct: 14  LDVLYQDKDIIVVNKPSGLLSVPGRDPAHYDSVYARVKAEH--PHCQIVHRLDMATSGVI 71

Query: 62  VFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEAN-VLDYPLKEELDKIADKFAKQDK 120
           V AL      E+   F + E  KTY A V G ++     +DYPL  +      +  K D 
Sbjct: 72  VVALIRSAERELKRQFHDRETSKTYLARVAGHVKNTTGSVDYPLICDWPNRPKQ--KVDH 129

Query: 121 E-AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDT 179
           E  + ++T +  L++ +           R  L++++P TGR HQLR HM  L HPI+GD 
Sbjct: 130 EIGKPSLTHFEVLSRAK-----------RSTLVKLKPITGRSHQLRVHMMALGHPILGDG 178

Query: 180 THGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRA 221
            + D +   L      A RL+LHA+EL   HPYT + +   A
Sbjct: 179 FYADPLAKSL------APRLLLHAAELTIKHPYTGESMTFSA 214