Pairwise Alignments

Query, 345 a.a., DUF3549 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  241 bits (614), Expect = 3e-68
 Identities = 145/345 (42%), Positives = 203/345 (58%), Gaps = 10/345 (2%)

Query: 1   MDTIRTLTALLQNSGCQYQIFDLGRRVQAMDNRQFAQVELGQQAYPFPLQRHAQFAIVYW 60
           M  I TLT  L  +  Q+Q++DLGRRVQ +D   F+Q+E  Q  YP P+Q HAQFAIV+W
Sbjct: 1   MTEITTLTQFLSTANTQFQVYDLGRRVQHIDMMAFSQIEALQAPYPSPIQGHAQFAIVFW 60

Query: 61  NEQRQPWIWMLKFALDERGLLQQADVGQFIQYLLEAMGSRLHQSLTEEQQQKLANNPYTF 120
           ++  Q +IW LK  LDERGLL  A   QFI+ ++EA+GS   Q+L+++QQ  LAN+P+ F
Sbjct: 61  DDSNQHFIWFLKLPLDERGLLSPAPRTQFIRMVIEALGSDPTQALSQDQQDTLANHPFAF 120

Query: 121 KPSEDKLAMLHSHIRMQLGLACSQYYEHAQHYFSGGLGWDKWHTVGLQGITDLCARLEQE 180
           KPS +KLA+ ++ +R QLGL  S  YE A  Y SG +  ++W  VGLQG+ D+C R    
Sbjct: 121 KPSAEKLALFNALVRKQLGLPASAQYEFAYQYLSGQVSPERWQDVGLQGLADICVRAAAL 180

Query: 181 QNGVLLRKALTHLPAQPLYAVLGALEHVTLPEKLAKRLSELAEAEVKASDPDLFLLAALV 240
            +   L  AL H   +   A+   LEH+TL   LA+RL  L+     + +  L+ L    
Sbjct: 181 DHNEQLLNALEHSADEVKIALCQQLEHITLDAPLAERL--LSAFYQGSPEQKLYYL---- 234

Query: 241 RALAGAPANILDATCDAILASPAICHPEVLIALAGRSWMSLENSGRAQRFLIRLAQTQNQ 300
           RALA APA  L       L          LI +AGR+W +L++    + +L  LA+ Q Q
Sbjct: 235 RALASAPA--LAQQAIQYLDEQDALDDNALITIAGRNWTALKDDQTRKIYLEALAK-QPQ 291

Query: 301 PLFNQLFADVVMLPALRGVMLPLLHASP-SPELAQALEQLQQMTR 344
             FNQ+FAD+V +PA+R  +L  L  S  S  LA A+  L ++T+
Sbjct: 292 GFFNQIFADIVAIPAIRTQLLMALRDSERSQALANAIGGLFRVTK 336