Pairwise Alignments

Query, 345 a.a., DUF3549 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  214 bits (545), Expect = 3e-60
 Identities = 125/337 (37%), Positives = 194/337 (57%), Gaps = 10/337 (2%)

Query: 1   MDTIRTLTALLQNSGCQYQIFDLGRRVQAMDNRQFAQVELGQQAYPFPLQRHAQFAIVYW 60
           M  I TL+  L  +  Q+Q+++LGRRVQ +D   F Q+E     YP+P+Q HAQFA+V+W
Sbjct: 1   MTEITTLSQFLTTAKTQFQVYELGRRVQHIDMLAFHQIESLVTPYPYPIQGHAQFAVVFW 60

Query: 61  NEQRQPWIWMLKFALDERGLLQQADVGQFIQYLLEAMGSRLHQSLTEEQQQKLANNPYTF 120
           NE +Q +IW LK  LDE+GLL  A   QFI+ +L A+G    Q LT+EQQ +LANNP++F
Sbjct: 61  NESQQHFIWFLKLPLDEQGLLSPAPRSQFIEMVLTALGQDPTQPLTDEQQDRLANNPFSF 120

Query: 121 KPSEDKLAMLHSHIRMQLGLACSQYYEHAQHYFSGGLGWDKWHTVGLQGITDLCARLEQE 180
           KPS++KL++ ++ +R QLGL+ S  YE A  Y SG +   +W  +G+QG++D+C RL + 
Sbjct: 121 KPSQEKLSVFNALVRKQLGLSASIQYEFAMQYLSGQIAPSEWQHIGMQGLSDVCVRLGEL 180

Query: 181 QNGVLLRKALTHLPAQPLYAVLGALEHVTLPEKLAKRLSELAEAEVKASDPDLFLLAALV 240
            +   +  +      +   A+   LEH+ L E +A ++   ++     ++   + L AL 
Sbjct: 181 DHEQHILASFDQAAIEVQIALCQCLEHLQLTEAIAMKI--FSKFITAPNEYQAYYLRALA 238

Query: 241 RALAGAPANILDATCDAILASPAICHPEVLIALAGRSWMSLENSGRAQRFLIRLAQTQNQ 300
                +   +L       L          LI++AGR+W  L+ +     +L  LA  Q Q
Sbjct: 239 SQTELSQQALLH------LQQTDRLDANALISIAGRNWPILKQALSRSIYLEALA-LQPQ 291

Query: 301 PLFNQLFADVVMLPALRGVML-PLLHASPSPELAQAL 336
             FNQ+FAD+V +P LR  +L  L + + S +L+QA+
Sbjct: 292 AFFNQIFADIVAIPNLRNHLLGELRNPNRSVQLSQAI 328