Pairwise Alignments

Query, 530 a.a., lytic transglycosylase F from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., Diaminopimelate-binding protein / L-cystine-binding protein from Pseudomonas syringae pv. syringae B728a

 Score = 52.0 bits (123), Expect = 3e-11
 Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 27/248 (10%)

Query: 34  ELEKIRERGVLRVGTLNN--PLSYYIGPDGPTGLDYELAREFAKELGVKLEMKPAYRLSS 91
           +L+KI++ G L VG      P S+       TG + E +   AKELGVK +++P+ +   
Sbjct: 32  QLQKIKDSGTLNVGLEGTYPPFSFVDESGKLTGFEVEFSEALAKELGVKAKIQPS-KWDG 90

Query: 92  LFPALKNGEVDIIAAGLSQSEERLKDFRAGPAYYYVS-QQVVYKKGDWRPRSFKQLVERQ 150
           +  AL +  +D++   ++ S+ER K +     Y     Q +V KK     +S K L  ++
Sbjct: 91  ILAALDSKRLDVVINQVTISDERKKKYDFSEPYTISGIQALVLKKNADTIKSVKDLSGKK 150

Query: 151 QTLLKDNPELAFFSVVDDSHFEHTLLAKQQKYPD--FQFHVDSNSDVNDLLKKVSQGELL 208
                         V   +++E  L A     PD   + + D  S + DL    S G + 
Sbjct: 151 ------------VGVGLGTNYEEWLKA---NVPDAIVKTYDDDPSKIQDL----SVGRID 191

Query: 209 FTMADSV-EVSLSQRIYPELAAAFELTEDQPISWFIRRSDDESLYALMIEFFGNLKQSGY 267
             + D +  + ++ +   +L  A E    Q     +R+ + E L A + +    L+  G 
Sbjct: 192 AILVDRLAALEMAAKTKNKLVPAGEAFSRQASGIALRKGEPE-LLAAIDKAIDKLRADGT 250

Query: 268 LASLEEKY 275
           L  L EKY
Sbjct: 251 LKKLSEKY 258