Pairwise Alignments

Query, 530 a.a., lytic transglycosylase F from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., lytic transglycosylase, catalytic (RefSeq) from Shewanella loihica PV-4

 Score =  415 bits (1067), Expect = e-120
 Identities = 214/501 (42%), Positives = 315/501 (62%), Gaps = 37/501 (7%)

Query: 21  LLVGCQIDSEPKSELEKIRERGVLRVGTLNNPLSYYIGPDGPTGLDYELAREFAKELGVK 80
           LL GCQ +    ++  + + +  L VGTL     Y     G  G DYE+A  FAK  G+ 
Sbjct: 13  LLTGCQGERVDAAKAVETQPKTQLNVGTLYGAQIYVTTGQGLAGFDYEMAERFAKHQGLT 72

Query: 81  LEMKPAYRLSSLFPALKNGEVDIIAAGLSQSEERLKDFRAGPAYYYVSQQVVYKKGDWRP 140
           L M+P   +S L+ A++NGE+D+IAAGL+ ++ R + FR GP  YYV+Q +VYK+G   P
Sbjct: 73  LNMQPYPTISDLYQAMRNGEIDLIAAGLADTQSRREQFRLGPPLYYVNQVLVYKQGAKYP 132

Query: 141 RSFKQLVERQQTLLKDNPELAFFSVVDDSHFEHTLLAKQQKYPDFQFHVDSNSDVNDLLK 200
               QL         DN      +V+ DS F  TL   Q+ YP+  +    + D  +LL 
Sbjct: 133 TDVSQL--------DDN-----ITVISDSSFIETLAEMQKLYPELVWDQQWDKDSEELLA 179

Query: 201 KVSQGELLFTMADSVEVSLSQRIYPELAAAFELTEDQPISWFIRRSDDESLYALMIEFFG 260
            +++ E+ +T+ADS    +++R  PEL A   L E Q + W +  +  + L + ++ F+ 
Sbjct: 180 MIARDEISYTIADSTTFEINRRYMPELRAGPVLREGQAVVWLLPPNGSDQLMSDLLSFWH 239

Query: 261 NLKQSGYLASLEEKYIGHIGAFDYVDTRAFIRALDTRLPRWTPLFQKYSAEFDWRLVAAL 320
             K++G LA L EKY  H+  FDYVDTRAF+RA+D+RLP++   F +Y+ + DWR +AA 
Sbjct: 240 QEKRAGTLAHLNEKYFAHVKRFDYVDTRAFLRAIDSRLPKYRDNFVEYAGDLDWRKLAAT 299

Query: 321 AYQESHWNPYAKSPTGVRGLMMLTLPTARSVGVSDRLDPEQSIRGGVEYLRRMMERVPDS 380
           AYQESHWNP A+SPTGVRG+MMLTLPTA+ +G+ +RLDPEQSIRGG +YL  ++ R+P+S
Sbjct: 300 AYQESHWNPNARSPTGVRGMMMLTLPTAKQMGIDNRLDPEQSIRGGAKYLSDILNRLPES 359

Query: 381 ISEHEKIWFALASYNIGYGHMMDARRLTKSQGADPDSWADVKDRLPQLQQKKYFTQTRYG 440
           I E++++WFALASYNIGYGH+ DAR+L +S G +P +W D+K  LP LQ++KY+ QTRYG
Sbjct: 360 IPENQRMWFALASYNIGYGHVEDARKLAQSMGLNPSAWRDLKKVLPLLQKRKYYKQTRYG 419

Query: 441 YARGDEARNYVENIRRYYQSIIGHLEQRQLATGDESIEDLTVIALDEEFFNEEANREILD 500
           YARG EA +YV+NIRRYY                      T++ +D +  N++   E+++
Sbjct: 420 YARGSEAVHYVDNIRRYYD---------------------TLVWIDNQ--NQQLQDEVME 456

Query: 501 EEAEALESESLENSESSAEPS 521
            + +  E +S ++  S+A+P+
Sbjct: 457 AQQQTAEKQS-QSEISAAQPN 476