Pairwise Alignments

Query, 530 a.a., lytic transglycosylase F from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., extracellular solute-binding protein family 3 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 53.5 bits (127), Expect = 9e-12
 Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 20/275 (7%)

Query: 6   YKLPIRALWLGLLSLLLVGCQIDSEPKSELEKIRERGVLRVGTLNNPLSYYIGPDGPT-- 63
           +KL    L   L++   +   I+   KS L +I  RG LRVG     + + +        
Sbjct: 4   FKLLAAMLLAVLVAAPAMAADIELAKKSTLNEIMARGELRVGFDAGYMPFEMTDKNGNYV 63

Query: 64  GLDYELAREFAKELGVKLEMKPAYRLSSLFPALKNGEVDIIAAGLSQSEERLKDFRAGPA 123
           G D +LA+E AK +GVK  +        + PAL + + DII +G++ ++ER         
Sbjct: 64  GFDIDLAKELAKAMGVKF-VPVNTDFDGMIPALLSDKFDIIISGMTVTQERNLRINFANP 122

Query: 124 YYYVSQQV-VYKKGDWRPRSFKQLVERQQTLLKDNPELAFFSVVDDSHFEHT-LLAKQQK 181
           Y  V Q V V KK + + ++++ L         + PE    S +  +  E    +  + K
Sbjct: 123 YIVVGQSVIVSKKHEGKVKTWEDL---------NKPEYTVVSRLGTTGEEAAKRMLPKAK 173

Query: 182 YPDFQFHVDSNSDVNDLLKKVSQGELLFTMADSVEVSLSQRIYPELAAAFELTEDQPISW 241
           Y  F+   D   +V +        ++ F +    E    + I+ +    +E     P+ +
Sbjct: 174 YKSFEKEADGALEVINGKADAWVYDMPFNVVFMAEQGKGKAIHLDKPFTYE-----PLGF 228

Query: 242 FIRRSDDESLYALMIEFFGNLKQSGYLASLEEKYI 276
            I++ D + L   +  F   +K  G    +  K++
Sbjct: 229 GIKKGDPDFL-NFLDNFLSQIKNDGRYDRIYNKWM 262