Pairwise Alignments

Query, 530 a.a., lytic transglycosylase F from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., transglycosylase, Slt family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  374 bits (959), Expect = e-108
 Identities = 190/439 (43%), Positives = 282/439 (64%), Gaps = 14/439 (3%)

Query: 44  LRVGTLNNPLSYYIGPDGPTGLDYELAREFAKELGVKLEMKPAYRLSSLFPALKNGEVDI 103
           LRVGTL  P  Y     G +G DY++A  FA+ L V L+M P   L+ L+ ALK  E+DI
Sbjct: 14  LRVGTLYGPQIYMTSGQGNSGFDYDMAVLFAEYLDVPLKMVPYTNLAELYDALKKNEIDI 73

Query: 104 IAAGLSQSEERLKDFRAGPAYYYVSQQVVYKKGDWRPRSFKQLVERQQTLLKDNPELAFF 163
           IAAG++++  R + FR GP  Y V+Q +VY++G   P+    L  +              
Sbjct: 74  IAAGMTETPARREHFRLGPPLYRVNQVLVYREGMPAPKDISDLKGK-------------I 120

Query: 164 SVVDDSHFEHTLLAKQQKYPDFQFHVDSNSDVNDLLKKVSQGELLFTMADSVEVSLSQRI 223
           +V+ DS F  TL   Q+++P   +   ++ D  +LL  ++  E+ +T+ADS  V +++R 
Sbjct: 121 TVIADSSFVETLTQLQKRHPTLVWDQVTDKDNEELLTMIANKEIDYTIADSSSVQINRRY 180

Query: 224 YPELAAAFELTEDQPISWFIRRSDDESLYALMIEFFGNLKQSGYLASLEEKYIGHIGAFD 283
            P L +   L E   + W +  +  + L + ++ F+   K +G L  L EKY GH+  FD
Sbjct: 181 LPVLRSGLVLEEKLNVVWLLPPTHSDGLMSQLLAFWHQEKLAGTLDHLNEKYFGHVKRFD 240

Query: 284 YVDTRAFIRALDTRLPRWTPLFQKYSAEFDWRLVAALAYQESHWNPYAKSPTGVRGLMML 343
           Y+DTRAF+RA++T LPR+   F+ ++ + DWR +AA +YQESHWNP A+SPTGVRG+MML
Sbjct: 241 YIDTRAFLRAIETVLPRYRQHFETHAGDLDWRKLAATSYQESHWNPNARSPTGVRGMMML 300

Query: 344 TLPTARSVGVSDRLDPEQSIRGGVEYLRRMMERVPDSISEHEKIWFALASYNIGYGHMMD 403
           T PTA+ +G+++RLD E+SIRGG  YLR M+ R+P+SI E +++WFALASYNIGY H+ D
Sbjct: 301 TQPTAKEIGITNRLDAEESIRGGAAYLRDMINRLPESIPESQRMWFALASYNIGYAHVED 360

Query: 404 ARRLTKSQGADPDSWADVKDRLPQLQQKKYFTQTRYGYARGDEARNYVENIRRYYQSIIG 463
           AR+L +S   +P++W D+K  LP LQ++KY+ +TRYGYARG EA +YV++IRRYY +++ 
Sbjct: 361 ARKLAESMELNPNAWQDLKKVLPLLQKRKYYQKTRYGYARGSEAVHYVDSIRRYYDTLVW 420

Query: 464 HLEQRQLATGDE-SIEDLT 481
              Q +    +E +  DLT
Sbjct: 421 VDNQSKQQNSEEVAPSDLT 439