Pairwise Alignments

Query, 530 a.a., lytic transglycosylase F from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., transglycosylase SLT domain/bacterial extracellular solute-binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  101 bits (252), Expect = 6e-26
 Identities = 121/453 (26%), Positives = 185/453 (40%), Gaps = 62/453 (13%)

Query: 34  ELEKIRERGVLRVGTLNNPLSYYIGPDGPTGLDYELAREFAKELGVK-----LEMKPAY- 87
           ++++IR+RGVLRV        ++I      G++ ELAR FA  LG K     L ++  + 
Sbjct: 65  DVKEIRQRGVLRVLVTYRKGDFFIADGELRGVEVELARAFAAWLGKKGGKKALPVRAIFI 124

Query: 88  --RLSSLFPALKNGEVDIIAAGLSQSEERLKDFR-AGPAYYYVSQQVVYKKGDWRPRSFK 144
                 L  AL+ G+ DI AAG + +E R      A P    + +    +KG   P S  
Sbjct: 125 PVAFDELLTALEQGKGDIAAAGFTVTEARSARVPFATPYLRGIDEVFAIRKGAPVPTSLD 184

Query: 145 QLVERQQTLLKDNPELAFFSVVDDSHFEH-----TLLAKQQKYPDFQFHVDSNSDVNDLL 199
           +L  R   +++ +           SH +H       LA Q   P       ++    DL 
Sbjct: 185 ELAGRTVHVVRGS-----------SHEQHLGELNVRLAAQGLAPLNIVTPSADLQPEDLF 233

Query: 200 KKVSQGELLFTMADSVEVSLSQRIYPELAA--AFELTEDQPISWFIRRSDDESLYALMIE 257
             +  G +   +ADS    L +R  P++    + +L   Q I+W +R      L+ +   
Sbjct: 234 DLLGTGAIDLMVADSHRARLWRRAMPDVQVLPSLKLKTGQDIAWAVRPDAPGLLHEVNAF 293

Query: 258 FFGNLKQS-GYLASLEEKYIGHIGAFDYVDTRAFIRALD----TRLPRWTPLFQKY--SA 310
           F  +  ++    A L E+Y        Y D    +  L+     R  R  P F +Y  + 
Sbjct: 294 FAADGGRAVKKAAGLLERY--------YADRSWHVEGLNRKFAARAKRLYPHFIRYGDTY 345

Query: 311 EFDWRLVAALAYQESHWNPYAKSPTGVRGLMMLTLPTARSVGVSDRL-DPEQSIRGGVEY 369
            FD  L+ A  Y+ES  N   +SP G  G+M +   TAR++G  D + +   +I  GV Y
Sbjct: 346 AFDPLLLLAQGYRESRLNQKLRSPRGAVGVMQVLPSTARTMGFPDVVKEAVTNIHAGVRY 405

Query: 370 LRRMMERV--PDSISEHEKIWFALASYNIGYGHMMDARRLTKSQGADPDSWADVKDRLPQ 427
           L  +         I E ++  F+LA+YN+G   M   R      G DP+ W         
Sbjct: 406 LEYVRSDYFSDADIREPDRTLFSLAAYNMGPNRMARVRERAIRMGLDPNRW--------- 456

Query: 428 LQQKKYFTQTRYGYAR--GDEARNYVENIRRYY 458
                 F    Y   R  G E   YV  I  YY
Sbjct: 457 ------FGNVEYAALRYVGREPVTYVAQISSYY 483