Pairwise Alignments

Query, 530 a.a., lytic transglycosylase F from Vibrio cholerae E7946 ATCC 55056

Subject, 279 a.a., glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 62/259 (23%), Positives = 111/259 (42%), Gaps = 21/259 (8%)

Query: 4   FAYKLPIRALWLGLLSLLLVGCQID--SEPKSELEKIRERGVLRVGTLNNPLSYYIGPDG 61
           F Y LP+  +   + S+   G Q      P+ +   I + G+L V T  N +S+Y+  D 
Sbjct: 10  FRYLLPVVIVLALIFSVRYCGKQEKPLGHPR-DYAAIAKEGILHVATEYNSISFYVDSDT 68

Query: 62  PTGLDYELAREFAKELGVKLEMKPAYRLSSLFPALKNGEVDIIAAGLSQSEERLKDFRAG 121
            +G  YEL   FA++ G+K E+ P          L +G  D+IA G+  + E LKD    
Sbjct: 69  VSGFHYELIEAFARDKGLKTEITPVMSFDERLRGLSDGRYDVIAYGILATSE-LKDSLLL 127

Query: 122 PAYYYVSQQV-VYKKGDWRPRSF---KQLVERQQTL--LKDNPELAFFSVVDDSHFEHTL 175
            +   +++QV V +K +    S     QL   Q+TL  +K +P +     + +   +   
Sbjct: 128 TSPIILNKQVLVQRKANGENDSLYIRNQLDLAQKTLHVVKGSPSILRIQNLGNEIGDTIY 187

Query: 176 LAKQQKYPDFQFHVDSNSDVNDLLKKVSQGELLFTMADSVEVSLSQRIYPELAAAFELTE 235
           + + +KY   Q           L+  V+ G++ + + D           P++     ++ 
Sbjct: 188 IKEIEKYGSEQ-----------LISLVAHGDIDYAVCDESIARAVADSLPQVDINTAISF 236

Query: 236 DQPISWFIRRSDDESLYAL 254
            Q  SW + +     L +L
Sbjct: 237 TQFYSWAVSKQSPALLDSL 255