Pairwise Alignments

Query, 530 a.a., lytic transglycosylase F from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., transglycosylase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  176 bits (446), Expect = 2e-48
 Identities = 132/444 (29%), Positives = 224/444 (50%), Gaps = 29/444 (6%)

Query: 29  SEPKSELEKIRERGVLRVGTLNNPLSYYIGPDGPTGLDYELAREFAKELGVKLEMKPAYR 88
           +E   +L +I++ G L V TL +  SY+I      G  YEL+ +FAK LG+KL ++ A  
Sbjct: 30  NETAHDLPQIKDSGELVVLTLYSSTSYFIYRGQEMGFQYELSEQFAKSLGLKLRIEVARN 89

Query: 89  LSSLFPALKNGEVDIIAAGLSQSEERLKDFRAGPAYYYVSQQVVYKKGDWRPRSFKQLVE 148
           +  L   L++GE D+IA  L  ++E  KD         ++ QV+ ++G+ + +  K + E
Sbjct: 90  VRELIQKLQSGEGDMIAYNLPITKE-WKDSLLYCGEDIITHQVIVQQGNGKHKPLKDVTE 148

Query: 149 RQQTLLKDNPELAFFSVVDDSHFEHTLLAKQQKYPDFQFHVDSNSDV--NDLLKKVSQGE 206
               + KD        V    +++  +    +       H  +   V   DL+ +V+QG+
Sbjct: 149 ---LIGKD------IYVKPGKYYDRLVNLNNELGGGIHIHKITGDSVTAEDLITQVAQGK 199

Query: 207 LLFTMADSVEVSLSQRIYPELAAAFELTEDQPISWFIRRSDDESLYALMIEFFGNLKQSG 266
           + +T+AD+    L++  YP L     ++ DQ  SW +R+   E   A       N+    
Sbjct: 200 IPYTVADNDLAKLNKTYYPNLNIDLSISFDQRSSWAVRKDSPELAAAATNWHKENMTSPA 259

Query: 267 YLASLEEKYIGHIGAFDYVDTRAFIRALDTRLPRWTPLFQKYSAE--FDWRLVAALAYQE 324
           Y AS++  +         +     +   + ++  +  LF+KY+ E  +DWR++A+LAY E
Sbjct: 260 YTASMKRYFENS----KMMPHSPILSLKEGKISHYDDLFKKYAQEIGWDWRMLASLAYTE 315

Query: 325 SHWNPYAKSPTGVRGLMMLTLPTARSVGV--SDRLDPEQSIRGGVEYLR---RMMERVPD 379
           S+++  A S  G +GLM L   TAR++GV      +PE+SI+  V+Y+    R    +PD
Sbjct: 316 SNFDTTAVSWAGAKGLMQLMPATARAMGVPAGKEQNPEESIKAAVKYIAATDRSFNMIPD 375

Query: 380 SISEHEKIWFALASYNIGYGHMMDARRLTKSQGADPDSWAD-VKDRLPQLQQKKYFTQ-- 436
              + E++ F LASYN G GH+ DA  L K  G +   W D V++ +     ++YFT   
Sbjct: 376 ---KQERLNFILASYNAGLGHIYDAMALAKKYGKNNLVWKDNVENFILLKSNEEYFTDPV 432

Query: 437 TRYGYARGDEARNYVENIRRYYQS 460
            + GY RG E  N+V +I+  ++S
Sbjct: 433 CKNGYFRGIETFNFVRDIQSRFES 456