Pairwise Alignments

Query, 184 a.a., general secretion pathway protein GspH from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., Type IV fimbrial biogenesis protein FimT from Pseudomonas fluorescens FW300-N1B4

 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)

Query: 15  MHR-GFTLLELLITVAVLTTMLLFAAPNFSKVSQQTKMTNLANELQGFLIQAKSEAVFRN 73
           MH+ GF+L+ELL+ + ++  +LL  +P F+++++       A  +   +  A++ A+ RN
Sbjct: 1   MHQQGFSLIELLMGLTIVGIVLLLVSPAFAELTESNHREQAAQSIVSGMRNARTAAITRN 60

Query: 74  QDLWVHIQGLPSITGQWQLVLSSVSDVAAIDASNTVALLQGQRYQNVFVSKTNTLTEVKF 133
           Q + +H  G+    GQ   ++  VS     D+SN + + Q    +   V        V+F
Sbjct: 61  QSVVIH--GINGDWGQGWRIILDVSGKGPEDSSNPLLVEQQSDARVPIVGNRPVKNFVQF 118

Query: 134 DHVMGNPQ------EAGSLFIKPSESAADSIKVTVHNRAGRIKV 171
              +G PQ      +AG++ I  S     S+   V +R GR+ +
Sbjct: 119 SS-LGEPQLPSGAFQAGTVHICASRKPV-SLHQVVLSRTGRVSL 160