Pairwise Alignments

Query, 184 a.a., general secretion pathway protein GspH from Vibrio cholerae E7946 ATCC 55056

Subject, 170 a.a., type IV pilus biogenesis protein, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 44.3 bits (103), Expect = 1e-09
 Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 5/160 (3%)

Query: 18  GFTLLELLITVAVLTTMLLFAAPNFSKVSQQTKMTNLANELQGFLIQAKSEAVFRNQDLW 77
           GFTL+EL+IT+A+ T +L    P  +++ Q  +  +    +Q  L  A++ A+     + 
Sbjct: 6   GFTLIELMITIAIATILLSIGLPQLTELHQANRADSAIKVIQQTLQYARNTAISYGLRVT 65

Query: 78  VHIQGLPSITGQWQLVLSSVSDVAA---IDASNTVALLQGQRYQNVFVSKTNTLTEVKFD 134
           V        T  W   L+  +D      +D ++ + +  G    N F+    +      D
Sbjct: 66  VCPLKDNQCTNDWHQGLTVFTDSGVSNQLDGNDILLMQTGSFDSNDFMFYNRSAARFLPD 125

Query: 135 HVMGNPQEAGSLFIKPSESAADSIKVTVHNRAGRIKVCTE 174
            +       G+    P  + +   K  + N+AGR++  T+
Sbjct: 126 GLASGSN--GTFKYCPGSADSPYSKAVIINQAGRVRFSTD 163