Pairwise Alignments

Query, 184 a.a., general secretion pathway protein GspH from Vibrio cholerae E7946 ATCC 55056

Subject, 170 a.a., type IV pilus biogenesis protein, putative (RefSeq) from Shewanella loihica PV-4

 Score = 42.7 bits (99), Expect = 3e-09
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 16  HRGFTLLELLITVAVLTTMLLFAAPNFSKVSQQTKMTNLANELQGFLIQAKSEAVFRNQD 75
           H GFTL+EL++T+AV T +L    P+ + + Q  +       +Q  L  A++ A+  N  
Sbjct: 4   HNGFTLIELMVTLAVATILLSVGLPSLTDLYQAYRADAAIKMIQQTLQFARNTAI--NYG 61

Query: 76  LWVHIQGLP--SITGQWQLVLSSVSDVAA---IDASNTVALLQGQRYQNVFVSKTNTLTE 130
           L V +  +     T  W L L   +D      +D ++ + +         FV        
Sbjct: 62  LRVTVCPIKDNQCTNDWHLGLGVFTDSGTSNQLDGTDKLLMQTSSFDSGDFVYYNRASAR 121

Query: 131 VKFDHVMGNPQEAGSLFIKPSESAADSIKVTVHNRAGRIKVCTE 174
            + D +       G+L   P  + +   K  + N+AGRI+   E
Sbjct: 122 FQPDGLASGSN--GTLRYCPGSANSPYSKAVIVNQAGRIRFSKE 163