Pairwise Alignments

Query, 184 a.a., general secretion pathway protein GspH from Vibrio cholerae E7946 ATCC 55056

Subject, 144 a.a., pilin, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 48.9 bits (115), Expect = 4e-11
 Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 18  GFTLLELLITVAVLTTMLLFAAPNFSKVSQQTKMTNLANELQGFLIQAKSEAVFRNQDLW 77
           GFTL+EL++ +A++  +   A P++  +  +  + + ANEL      A+ EA+ RNQ + 
Sbjct: 8   GFTLVELMVVIAIIGILASLALPSYRDLIAKESLISTANELISSYKFARGEAIKRNQAVT 67

Query: 78  VHIQGLPSITGQWQLVLSSVSDVAAIDASNTVALLQGQRYQNVFVSKTNTLTEVKFDHVM 137
           +  +      G+W L++S+  ++     S+    + G    ++  +   T T++  ++  
Sbjct: 68  LEAKQ----DGRW-LIISNQEELKVFSPSSRGISIDGFNTLDINATGNTTKTQISLENTQ 122

Query: 138 GNPQEAGSLFIKPS 151
           G   E  +L I PS
Sbjct: 123 G---EKLNLCILPS 133