Pairwise Alignments

Query, 381 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., DNA-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  150 bits (379), Expect = 5e-41
 Identities = 117/345 (33%), Positives = 162/345 (46%), Gaps = 68/345 (19%)

Query: 1   MSKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDA 60
           M  +D+Y++LGV   A +  IK AY++LA KYHPD  S +  A  KFK+V EAYE L  A
Sbjct: 1   MDFKDYYKILGVEPTADDSTIKAAYRKLARKYHPD-VSKEKDAETKFKDVSEAYEALKSA 59

Query: 61  QKKAAYD---QYG-HAAFEQGAGGF-GGGGFGGG--GADFGDIFGDVFGDI---FGGGRR 110
            K+A YD   +YG H    QG  G+   GGFGGG    DF D F  +FG+    FGGG +
Sbjct: 60  DKRAEYDDLRRYGQHGQPFQGPPGWQSRGGFGGGQDAGDFSDFFSSIFGNRGSGFGGG-Q 118

Query: 111 GGGPRAQRGSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQTCGTCH 170
            G    +RG D+   + + LEE +   SK++                             
Sbjct: 119 SGRSAGRRGQDVEMELPIFLEETLSSESKKV----------------------------- 149

Query: 171 GHGQVQMRQGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGVDTGDR 230
                Q+ Q   A Q    T   K   +K P  V  G                     +R
Sbjct: 150 ---TFQVPQYNAAGQHVSNT--SKSLNVKIPLGVTDG---------------------ER 183

Query: 231 IRLSGEGEAGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEVEVPTL 290
           IRL G+G  G  G   GDLY+ +    H  F+ +G +L   +P++    ALG EV VPTL
Sbjct: 184 IRLKGQGAPGVGGGANGDLYLTIRFAPHPKFDVEGQDLIITLPLAPWELALGTEVAVPTL 243

Query: 291 DGRVSLKVPAETQTGRMFRMRGKGVKGVRSAALGDLIVKLVVETP 335
            G+++LKVPA +Q G+  R +G G++  ++   G L V+L    P
Sbjct: 244 TGKINLKVPAGSQNGQRMRAKGHGLRN-KAGERGYLFVQLKAVMP 287