Pairwise Alignments

Query, 381 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., chaperone DnaJ (NCBI) from Rhodospirillum rubrum S1H

 Score =  167 bits (423), Expect = 4e-46
 Identities = 120/351 (34%), Positives = 173/351 (49%), Gaps = 41/351 (11%)

Query: 4   RDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDAQKK 63
           +D Y VLGV R AS+ +IK AY++LA   HPD N  D GA +KFK++  AY++L+D QK+
Sbjct: 2   KDPYTVLGVARGASQDEIKSAYRKLARSMHPDVNQNDPGAEDKFKDISGAYDLLSDPQKR 61

Query: 64  AAYDQYGHAAFEQGAGGF--GGGGFGGGGADFGDIFGDVFGDIFGGGRRGGGPRAQRGSD 121
           A +D+    A      GF  G G +G  GA  G    D        GR GG  R    S 
Sbjct: 62  ARFDRGEIDAAGNEHRGFRPGTGPYGARGAYRGASGND--------GRSGGFGRFDFEST 113

Query: 122 LRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQTCGTCHGHGQVQMRQGF 181
             +  +    E  R  S+              G G     +A   G   G   V+ +   
Sbjct: 114 --FGEDDLFSEMFRRASR--------------GQGGPGAGTAGAAGA--GPRPVRGQDAQ 155

Query: 182 FAVQQTCPTCH-GKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGVDTGDRIRLSGEGEAG 240
           + ++ T      G  K I                KTL+V+IP G + G  +RL G+G  G
Sbjct: 156 YRLKVTFEEAALGSTKRIT-----------LTNRKTLDVRIPPGSEDGRSLRLKGQGADG 204

Query: 241 EMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEVEVPTLDGRVSLKVPA 300
             G  AGD  V++ VKEH  F RDG N+  +VPV+     LGG++ VPTL+G+VS+ VP 
Sbjct: 205 SNGGAAGDALVEIGVKEHAFFRRDGINVVVDVPVTLQEVVLGGKITVPTLEGKVSVTVPE 264

Query: 301 ETQTGRMFRMRGKGVKGVRSAALGDLIVKLVVETPVNLSARQKELLKEFEE 351
            + TG + R+RGKG+    +   GDL+V+L +  P  +  + K L+K+ ++
Sbjct: 265 GSNTGTVLRLRGKGIP-QENGQRGDLLVRLGITLPDPVDPKLKTLVKKLKD 314