Pairwise Alignments

Query, 381 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., DNA-binding protein from Klebsiella michiganensis M5al

 Score =  144 bits (362), Expect = 4e-39
 Identities = 112/354 (31%), Positives = 158/354 (44%), Gaps = 63/354 (17%)

Query: 1   MSKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDA 60
           M  +D+Y +LGV      + IK AY+RLA KYHPD  S +  A  KFK++ EA+E+L D 
Sbjct: 1   MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDV-SKENDAEAKFKDLAEAWEVLKDD 59

Query: 61  QKKAAYDQ-YGHAAFEQ-GAGGFGGGGFGGGGADFGDIFGDVFGDIFGGGRRGGGPRAQR 118
           Q++A YDQ + H    Q G              DF DIF  +FG      RR  G     
Sbjct: 60  QRRAEYDQLWQHRNDPQFGRQQQHSREQSYSQQDFDDIFSTMFGQQAHHSRRQHG----- 114

Query: 119 GSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQTCGTCHGHGQVQMR 178
                          VRG   EIEV   +           + T A+   T          
Sbjct: 115 ---------------VRGHDLEIEVAVFL-----------EETLAEQTRTIS-------- 140

Query: 179 QGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGVDTGDRIRLSGEGE 238
                               K P     G    +  KTLNVKIPAGV  G RIRL G+G 
Sbjct: 141 -------------------YKLPVYNVFGMVESETPKTLNVKIPAGVVDGQRIRLKGQGT 181

Query: 239 AGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEVEVPTLDGRVSLKV 298
            GE G P GDL++ +H+  H +F+  G+NL   +P++   AALG +V +PTL   + L +
Sbjct: 182 PGENGGPNGDLWLVIHIAPHPLFDVVGHNLEIVLPLAPWEAALGAKVTIPTLKESILLTI 241

Query: 299 PAETQTGRMFRMRGKGVKGVRSAALGDLIVKLVVETPVNLSARQKELLKEFEES 352
           P  +Q G+  R++GKG+        GDL   + +  P     + + L ++  ++
Sbjct: 242 PPGSQAGQRLRVKGKGL--TSKTTTGDLYAVIKIVMPPKPDEKSRALWQQLADA 293