Pairwise Alignments

Query, 381 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., chaperone protein dnaJ (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  300 bits (769), Expect = 4e-86
 Identities = 168/398 (42%), Positives = 233/398 (58%), Gaps = 28/398 (7%)

Query: 3   KRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDAQK 62
           KRD+YEVL V + A+  +IKKAY++ A++YHPD+N GD  A EKFKE  EAY++L++  K
Sbjct: 4   KRDYYEVLEVTKTATVEEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSNPDK 63

Query: 63  KAAYDQYGHAAFEQGAGGFGG--GGFGGGGADFGDIFGDVFGDIFGG------------- 107
           ++ YDQ+GHA    GA G GG  GGFGG G    DIF  +FGDIFGG             
Sbjct: 64  RSRYDQFGHAGVS-GAAGNGGPFGGFGGEGMSMDDIFS-MFGDIFGGRGGGFSGGFGGFS 121

Query: 108 --GRRGGGP--RAQRGSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSA 163
             G  GGG   R  RGSDLR  ++++L+E   G  K+ ++   V C+ C G+GA+    +
Sbjct: 122 GFGGGGGGSQQRRYRGSDLRVKVKMTLKEISTGVEKKFKLKKYVPCNHCHGTGAEGDGGS 181

Query: 164 QTCGTCHGHGQVQMRQ----GFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNV 219
           +TC TC G G V   Q    G    + TCPTC+G+GKIIK+ C  C G G     + + V
Sbjct: 182 ETCPTCKGSGSVIRNQQTILGTMQTRTTCPTCNGEGKIIKNKCKECGGDGIVYGEEVVTV 241

Query: 220 KIPAGVDTGDRIRLSGEGEAGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMA 279
           KIPAGV  G ++ + G+G AG+     GDL + V  + H    RD N+L   + +SF  A
Sbjct: 242 KIPAGVAEGMQLSMGGKGNAGKHNGVPGDLLILVEEEPHPDLIRDENDLIYNLLLSFPTA 301

Query: 280 ALGGEVEVPTLDGRVSLKVPAETQTGRMFRMRGKGVKGVRSAALGDLIVKLVVETPVNLS 339
           ALGG VE+PT+DG+V +K+ + TQ G++ R+RGKG+  V     GDL+V + +  P  L+
Sbjct: 302 ALGGAVEIPTIDGKVKVKIDSGTQPGKVLRLRGKGLPNVNGYGTGDLLVNISIYVPEALN 361

Query: 340 ARQKELLKEFEESCGGEAATKHKPKAEGFFNGVKKFFD 377
             +K  L++ E S   + +T  K K    F   K FFD
Sbjct: 362 KEEKSTLEKMEASDNFKPSTSVKEK---IFKKFKSFFD 396