Pairwise Alignments

Query, 635 a.a., molecular chaperone DnaK from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., chaperone protein dnaK (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  736 bits (1901), Expect = 0.0
 Identities = 399/643 (62%), Positives = 481/643 (74%), Gaps = 19/643 (2%)

Query: 1   MGKIIGIDLGTTNSCVAVLDGDKPRVIENAEGERTTPSVIAYTDG-ETLVGQPAKRQAVT 59
           MGKIIGIDLGTTNSCVAV +G++P VI N+EG+RTTPSV+A+ DG E  VG PAKRQA+T
Sbjct: 1   MGKIIGIDLGTTNSCVAVFEGNEPVVIANSEGKRTTPSVVAFVDGGERKVGDPAKRQAIT 60

Query: 60  NPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVKADNGDAWVEAKGQKMAAPQVSAEVL 119
           NP  T+F+IKR +G  ++  +VQ+++  +PYK+VK DN    V+  G+     ++SA +L
Sbjct: 61  NPTRTIFSIKRFMGENWD--QVQKEVTRVPYKVVKGDNNTPRVDIDGRLYTPQEISAMIL 118

Query: 120 KKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 179
           +KMKKTAED+LG+ VT AVITVPAYF+D+QRQATK+AG+IAGLEVKRI+NEPTAAALAYG
Sbjct: 119 QKMKKTAEDYLGQEVTEAVITVPAYFSDSQRQATKEAGQIAGLEVKRIVNEPTAAALAYG 178

Query: 180 LDKQGGDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINYL 239
           LDK   D  IAV+DLGGGTFDISI+E     G   FEVLSTNGDTHLGG+DFD  +IN+L
Sbjct: 179 LDKAHKDMKIAVFDLGGGTFDISILEF----GGGVFEVLSTNGDTHLGGDDFDQVIINWL 234

Query: 240 VDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 299
           V EFK D+G DL  DP+A+QRLKEAAEKAKIELSS+  T++NLPYI      PKH+   +
Sbjct: 235 VQEFKNDEGADLTQDPMALQRLKEAAEKAKIELSSSTSTEINLPYIMPVNGVPKHLVKTL 294

Query: 300 TRAKLEALVEDLVQRSLEPLKVALADADLSVNDITDVILVGGQTRMPMVQKKVAEFFGKE 359
           TRAK E+L   L+Q  LEP K A++DA LS +DI +VILVGG +R+P VQK V +FFGK 
Sbjct: 295 TRAKFESLAHGLIQACLEPCKKAMSDAGLSNSDIDEVILVGGSSRIPAVQKLVEDFFGKT 354

Query: 360 PRKDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPT 419
           P K VNPDE VAVGAAVQG VL  E+K V+LLDVTPLS+GIET+GGVMTKLI+ NTTIP 
Sbjct: 355 PSKGVNPDEVVAVGAAVQGAVLTDEIKGVVLLDVTPLSMGIETLGGVMTKLIDANTTIPA 414

Query: 420 KANQVFSTAEDNQSAVTIHVLQGERKQAMYNKSLGQFNLEGINPAPRGMPQIEVIFDLDA 479
           + ++ FSTA DNQS VTIHVLQGER  A  NKS+GQFNL GI PA RG+PQIEV FD+DA
Sbjct: 415 RKSETFSTAADNQSEVTIHVLQGERPMAAQNKSIGQFNLSGIAPARRGVPQIEVTFDIDA 474

Query: 480 DGILHVSAKDKQTGKEQKITIQASGGLSDAEIEKMVQEAEANKEADKKFEELATARNQAD 539
           +GIL VSAKDK TGKEQ I I+AS GLS  EIEKM  EAEAN EADKK  E     NQAD
Sbjct: 475 NGILKVSAKDKATGKEQAIRIEASSGLSKEEIEKMKAEAEANAEADKKEREKIDKLNQAD 534

Query: 540 QMIHATRKQITEAGEALPADEKAKIETAINELETAKKGEDKAEID---AKVQALMAAAQK 596
            +I  T  Q+ E G+ LPAD+KA IE A+ +L+ A K +D A ID   A++  +   A  
Sbjct: 535 SVIFQTENQLKELGDKLPADKKAPIEAALQKLKDAHKSQDLAAIDTAMAEINTVFQTASA 594

Query: 597 LMEI---AQQQAQA-----QGANAGQSSAKE-DDVVDAEFEEV 630
            M     AQ  AQA      G NAGQ ++K  D+V DA+FEEV
Sbjct: 595 EMYAQGGAQGGAQAGPDMDAGQNAGQDNSKHGDNVQDADFEEV 637