Pairwise Alignments

Query, 554 a.a., DNA repair protein RecN from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., recombination and repair protein (RefSeq) from Shewanella loihica PV-4

 Score =  627 bits (1617), Expect = 0.0
 Identities = 326/555 (58%), Positives = 421/555 (75%), Gaps = 8/555 (1%)

Query: 1   MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGED 60
           ML  LSINNFAIV+ L+L+   GMT+ITGETGAGKSIAIDALGLCLG RA+A+ VR G  
Sbjct: 1   MLCQLSINNFAIVRFLELDFKSGMTSITGETGAGKSIAIDALGLCLGNRADANTVRPGAS 60

Query: 61  KTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTL 120
           K EVSA F L++  LA RWLEDN+L    ECILRR I  DGRS+A+ING+PVPL+Q++ L
Sbjct: 61  KAEVSARFALNDIPLAKRWLEDNDLELDDECILRRTIGSDGRSRAYINGNPVPLNQMRAL 120

Query: 121 GQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATRHAYQNWRQASNQLKQLRENS 180
           GQ LI +HGQHAH  ++K E+QL++LD YA H  LL+A   +YQ ++    +L QL+++ 
Sbjct: 121 GQQLIGIHGQHAHHAMLKSEHQLTLLDSYANHKMLLEACSASYQRFKLIQKELSQLQQSQ 180

Query: 181 QQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV 240
            +  A+ QLL+YQ++EL+E ALGE+EF E+E E K+LAN   L   CQR + LL + EE 
Sbjct: 181 HERIARKQLLQYQVEELDEFALGEEEFDEIEAEHKKLANGTALIQACQRTLYLLQDNEE- 239

Query: 241 NALGLLQSVSHTLIDLAE----MDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPE 296
              G ++S+ +  +D A+     D +L  + +M+ +ALIQ++E+  EL+ YLD +++DPE
Sbjct: 240 ---GAIESLLNMSLDQAQELEGYDPELKGVGNMLNDALIQVQESSSELQRYLDKLELDPE 296

Query: 297 RMAYVEERYSKVMSLARKHHVLPEELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQT 356
             A +E+R SK+M LARKHHV  ++LYQHHQAL Q++++LD  +EK+  +A +++   ++
Sbjct: 297 HFAALEQRLSKIMMLARKHHVNAKDLYQHHQALSQELSELDSDEEKLDEIAQQLESCRES 356

Query: 357 FVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQDSAHSSPLGFDAVTFLV 416
           F+A A KL +SR RYAKELDK +++S+HELSM K +F I+VQ +    SP G D V F V
Sbjct: 357 FIAHAQKLSQSRQRYAKELDKQVTRSIHELSMPKGKFIIDVQFNPEMMSPNGCDTVEFQV 416

Query: 417 STNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKL 476
           +TNPGQPLQPIAKVASGGELSR+ L IQVITA+KV TP+LIFDEVDVGISGPTAAVVGK+
Sbjct: 417 TTNPGQPLQPIAKVASGGELSRIGLGIQVITAKKVATPTLIFDEVDVGISGPTAAVVGKM 476

Query: 477 LRKLGESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGG 536
           LR LGESTQVLCVTHLPQVAG GH  +FV KQ+KAG+TET M+ LD+ QRI ELARLLGG
Sbjct: 477 LRALGESTQVLCVTHLPQVAGNGHQHMFVNKQSKAGQTETSMVPLDKGQRIEELARLLGG 536

Query: 537 SQITESTLANAKELL 551
             IT +TLANAKELL
Sbjct: 537 DVITNNTLANAKELL 551