Pairwise Alignments

Query, 554 a.a., DNA repair protein RecN from Vibrio cholerae E7946 ATCC 55056

Subject, 550 a.a., SMC domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  199 bits (505), Expect = 3e-55
 Identities = 163/573 (28%), Positives = 266/573 (46%), Gaps = 46/573 (8%)

Query: 1   MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGED 60
           ML +L I + A+++ ++L+ + G+  +TGETGAGKS  + AL   +G R  + MVR G++
Sbjct: 1   MLEYLRIRDLALIEDMELDFAPGLNALTGETGAGKSFILKALNFLIGDRLTSDMVRPGKE 60

Query: 61  KTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKD-GRSKAFINGSPVPLSQLKT 119
           K  V A F L +                 + +LRR +T D GRS+ FIN        ++ 
Sbjct: 61  KAHVEALFALPDG----------------DMVLRRELTADTGRSRLFINDRLSSQDAVRD 104

Query: 120 LGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATRHAYQNWRQASNQLKQLREN 179
           +   L+    QH  Q+L++P +Q  +LD++    DLL A   A +  R+ + + ++L   
Sbjct: 105 MRASLVVHTSQHGQQKLLQPAFQARLLDEFLNRPDLLAARDDALKGLREVAARREELAAR 164

Query: 180 SQQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEE 239
           ++  + +  +LE+Q +E++++A    E   LE+ ++ L +        +RA+ +L  GE+
Sbjct: 165 ARSLEDRRDVLEFQQREIDKVAPEAGEEERLEERRRALRDVASAQQAQERALAVL-RGED 223

Query: 240 ----VNALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSID--- 292
                 ALGLL+     L  L   DS   A  S  A        T    R  L  ++   
Sbjct: 224 GPGVAEALGLLERTLDGLARLHGADSGDAAPGSGDASGWAADVTTISAFRQGLSDLERRL 283

Query: 293 -----------VDPERMAYVEERYSKVMSLARKHHVLPEELYQHHQALLQQIAQLDCSDE 341
                       D   +  +E+R  ++  L RK     +E+    + + + ++ LD    
Sbjct: 284 RRRPAPAASDGDDDMDVEAIEKRLYELAQLKRKLRRTLDEIVDLRREIEENLSFLDACRL 343

Query: 342 KMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQDS 401
            +  L  E +   +   A   +L+ +R   A  L + +   +  L   +    + V  D 
Sbjct: 344 DLRTLEREEEARKEQLCAVLAELNPARQEAATRLAQALEGELAGLGFSE---HVRVTFDF 400

Query: 402 AHSSP---LGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIF 458
               P      D    +   NPGQP QP+ ++ASGGELSR  LA+  + A+  +T +LIF
Sbjct: 401 TPHEPWPGCVEDRARLMWVPNPGQPPQPLDRIASGGELSRFLLAVVGLMARD-ETATLIF 459

Query: 459 DEVDVGISGPTAAVVGKLLRKLGESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQM 518
           DEVD G+ G T   V + L  L    QV+ +TH PQ+A        V+K+     T T  
Sbjct: 460 DEVDSGVGGLTLNRVSERLAALAGRRQVILITHWPQLAARAGRHFQVSKEVADNATFTLC 519

Query: 519 LKLDQEQRIAELARLLGGSQITESTLANAKELL 551
            +LD E    ELAR+ GG    E   A A+EL+
Sbjct: 520 RRLDGEDIRKELARMAGGGGQGE---AMARELI 549