Pairwise Alignments

Query, 554 a.a., DNA repair protein RecN from Vibrio cholerae E7946 ATCC 55056

Subject, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis JJ

 Score = 42.7 bits (99), Expect = 8e-08
 Identities = 88/452 (19%), Positives = 184/452 (40%), Gaps = 85/452 (18%)

Query: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGE-- 59
           L+ + + NF   K+ +L++  G T I G  G+GKS  ID +   L G+  A  +R G+  
Sbjct: 4   LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVL-GKTSAKSLRAGKFN 62

Query: 60  -------------------------------DKTEVSAAFHL--DNNLLASRWLEDNELL 86
                                          DK  +S    +  DNN     W E+ E+ 
Sbjct: 63  QLITYHNGKRENFAEVTLIFDNKDRKMPVDSDKVGISRKVKINGDNNYYLI-WNEEKEVK 121

Query: 87  EGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQ--LMK-----P 139
           E  E    + + ++ R K  +  S +    L  +G++ ++  G +   Q  L+K     P
Sbjct: 122 ENGEI---KTVKEEKRKK--VKKSEI----LDVIGKISLSADGFNIILQGDLIKIIDTTP 172

Query: 140 EYQLSMLDQYAGHADLLKATRHAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNE 199
             +  ++D+ +G A+         +   +A  +L++ RE  ++   ++  ++  +++L +
Sbjct: 173 NERRKIIDEISGVAEF-------DEKGEKAKKELEKAREFIEKIDIRINEVKNNLEKLKK 225

Query: 200 LALGEDEFVELEQEQKRLANSGDLALNCQRAIELLN-----EGEEVNALGLLQSVSHTLI 254
                +  V+L +E K         +   + IE LN       EE+ AL  ++     L 
Sbjct: 226 EKEDAETHVKLTEELK-----ATKYILTSKKIEFLNGILEKTKEEIEALKEMKVC--FLK 278

Query: 255 DLAEMDSKLTALPSMVAEALIQLEETYHE--------LRNYLDSIDVDPERMAYVEERYS 306
           +++E D+K   + + +   + +L E  +E        ++    ++D D + +    +   
Sbjct: 279 EISEYDAKSNDIRNRLQNLINELNEKGNEEIMELHKSIKEMEVTVDNDKKSLNGALDDLK 338

Query: 307 KVMSLARKHHVLPEELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHK 366
            V S + K      E  Q  + +  +  Q    + +++ L +E++ L         K+ +
Sbjct: 339 NVNSQSEKKGQDLVETRQKIETIRTETLQ---KEAEINTLKTEMENLETEKKKLKSKVEE 395

Query: 367 S--RVRYAKELDKLISQSMHELSMEKAQFKIE 396
           S  +    K+ ++ +S+ ++E   E   FK E
Sbjct: 396 SETQTEILKQQERKLSERINESQNELYNFKNE 427



 Score = 42.4 bits (98), Expect = 1e-07
 Identities = 67/347 (19%), Positives = 134/347 (38%), Gaps = 55/347 (15%)

Query: 168  QASNQLKQLRENSQQNQAQLQLLEYQI-KELNELALGEDEFVELEQEQKRLANSGDLALN 226
            + ++ +K+L E     +  +Q  +  + K    L   ++ + +L ++ + L    +    
Sbjct: 855  ELNSNIKELSEKKTILEQNIQFYKNNVEKNFEILKTKKERYEDLTKDLRELTEKKEAF-- 912

Query: 227  CQRAIELLNEGEEVNALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRN 286
             ++ +E+LN GE+    G +           + +S++ +L    A+   +LEE       
Sbjct: 913  -EKELEILN-GEKRRVYGRIN----------QNESQINSLSIDKAKYETRLEEE------ 954

Query: 287  YLDSIDVDPERMAYVEERYSKVMS-LARKHHVLPEELYQHHQALLQQIAQLDCSDEKMSA 345
                     +R  YV E   ++   +  K      +  + HQ        L+   +K+  
Sbjct: 955  ---------DRKLYVCENIEQISEDITSKIKEFDVDALESHQI------DLEGHIKKLEP 999

Query: 346  LASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQDSAHSS 405
            +       YQ  V   D+L + R  Y  E  K +   + E+S  K +  ++V    A + 
Sbjct: 1000 VNMRAIDDYQYIVDRYDELFEKRTDYENEEKKYL-HLIEEVSKRKKEVFMDVYLKVAENY 1058

Query: 406  PLGFDAVTF---LVSTNPGQPLQ--------PIAK------VASGGELSRMSLAIQVITA 448
               +  +     L   NP  P          P+ K      V SGGE S  +LA      
Sbjct: 1059 EKIYTEIGGSGKLSLENPEDPFSGGLLIDASPMNKKLQSLDVMSGGEKSLTALAFLFAIQ 1118

Query: 449  QKVDTPSLIFDEVDVGISGPTAAVVGKLLRKLGESTQVLCVTHLPQV 495
                 P  + DEVD  +    A ++G++++   + +Q + ++H  Q+
Sbjct: 1119 HLNPAPFYVLDEVDAALDTKNAGLIGEMIKNASKDSQFIVISHREQM 1165



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 61/323 (18%), Positives = 131/323 (40%), Gaps = 52/323 (16%)

Query: 72  NNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQH 131
           N +L     E   L E K C L+ I   D +S           + ++   Q LIN   + 
Sbjct: 256 NGILEKTKEEIEALKEMKVCFLKEISEYDAKS-----------NDIRNRLQNLINELNEK 304

Query: 132 AHQQLMKPEYQLSMLDQYAGHADLLKATRHAYQNWRQASNQLKQLRENSQQNQAQLQLLE 191
            ++++M+    +  ++    +    K+   A  + +  ++Q ++  ++  + + +++ + 
Sbjct: 305 GNEEIMELHKSIKEMEVTVDNDK--KSLNGALDDLKNVNSQSEKKGQDLVETRQKIETIR 362

Query: 192 YQ-IKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEVNALGLLQSVS 250
            + +++  E+   + E   LE E+K+L +  +                        +S +
Sbjct: 363 TETLQKEAEINTLKTEMENLETEKKKLKSKVE------------------------ESET 398

Query: 251 HTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMS 310
            T I L + + KL+   +     L   +  ++ L N ++    +  +     E   K + 
Sbjct: 399 QTEI-LKQQERKLSERINESQNELYNFKNEFNALENEINKKSFNLTKNKETIETLQKELE 457

Query: 311 LARKHHVLPEELYQHHQALLQQIA-QLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRV 369
             R  H   + LY+     L+ +A +L+ S +K+  L  E    YQ      +KL KS  
Sbjct: 458 EIRSEHEDTKSLYKE----LEDVAVELEYSKKKVVTLL-ENKKEYQ------EKLDKSHA 506

Query: 370 RYAKELDKL-ISQSMHELSMEKA 391
            Y KE  K+   + M + S+++A
Sbjct: 507 DYIKENAKIKAMKDMEDFSLDRA 529