Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., Integrase from Pseudomonas fluorescens FW300-N2E2

 Score =  147 bits (370), Expect = 8e-40
 Identities = 123/415 (29%), Positives = 191/415 (46%), Gaps = 35/415 (8%)

Query: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60
           MA  T K  +K +++  P        DG GL L++   G   WIF Y     GK  ++  
Sbjct: 1   MASLTTKAVEKIVRSGSPGMTN----DGGGLYLKLGRTGGASWIFRY--KLAGKSRDMGL 54

Query: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEH-------------TF 107
           G + ++SL  AR+    A++L   G+DP   R  + + H+   E              TF
Sbjct: 55  GKHSEVSLAVAREKAAEARKLSKSGVDPLTSRDEEMERHRLEKEAERLAQDAAKAKATTF 114

Query: 108 ENVTKDWFAIKQNDVTPDYALDIWRS-LELHIFPHISDKPVKAITAPEIIELLKPIEAKG 166
           + V  D+ A  +           W + L  + F  I D P + I    ++++LKPI    
Sbjct: 115 KEVALDYIAAHRTGWKNAKHAQQWENTLATYAFKVIGDLPTQEIGIEHVLKILKPIWTVI 174

Query: 167 SLETVKRLTQRLNEVMNFATNCGLIQA-NPLTG-------IKAAFKKPKKENMAALTPAE 218
             ET  RL  R+  V++ A   GL    NP          +    K    ++ AA++  E
Sbjct: 175 P-ETASRLRNRIELVLDAAKARGLRDGENPARWRGHLDKLLPPRAKVRAVKHHAAMSWTE 233

Query: 219 LPELMSAIANASIKRTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRR 278
           LP  M+ +  A  +  +   L + + T  R +E   + W EI+   KVWTIPA RMK  +
Sbjct: 234 LPAFMAPLEKA--EDLSSKALRFTILTACRTSEVLESTWAEIDVAAKVWTIPALRMKAGK 291

Query: 279 EHRIPLTEQMLALLEVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHG 338
           EHR+PL++  L LL  +  I G+ + +F   R  K+P ++    M L+RM     L +HG
Sbjct: 292 EHRVPLSKAALDLLAGLPRIKGN-NHLFAGAR-KKRPLSNMAMLMTLRRMK-RDDLTTHG 348

Query: 339 LRSLASTTLNEQGFDP-DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEH 392
            RS      +E    P ++ E ALAH  +N V +AY R D  E+R+ +M  W+ +
Sbjct: 349 FRSTFRDWASEVTHYPREVCEQALAHTVENAVEAAYRRGDLFEKRRILMEDWARY 403