Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score =  253 bits (647), Expect = 5e-72
 Identities = 138/392 (35%), Positives = 217/392 (55%), Gaps = 10/392 (2%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LT  ++K++ PR+ +Y L DG GL L I+  G K W F +    +GK++++S G    ++
Sbjct: 3   LTALQVKSAAPRKSDYGLADGGGLFLWIRAAGGKSWRFRFR--LDGKQSHISLGTIDKVT 60

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L QAR+    A++L+AQG  P  +RK  +        +TF+++  +W   K    +  YA
Sbjct: 61  LAQARQLASDARQLVAQGRHPGLERKVMRAQAAMSRANTFKSLALEWHQHKAPRWSVGYA 120

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
            D+  + EL +FP +   P+  I   + +++ + IE++G+LE ++++ QR  EV  FA  
Sbjct: 121 GDVVEAFELDVFPQVGSLPLTDIKPMQWLQVFRRIESRGALEKLRKVRQRCQEVYRFAIA 180

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAI----ANASIKRTTRCLLEWQL 243
            G  + NP+  I  A + P   +   L  AE+P L+ +I     +  +K  TR L+    
Sbjct: 181 TGRAEYNPIADIGGALQTPTSRHYPFLPIAEIPALIRSIQACPGHDVVKIATRLLIL--- 237

Query: 244 HTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRD 303
            T  R AE  G  W E + ++ +W IPA RMK RR H +PL++Q +A+L  ++ I+G   
Sbjct: 238 -TGVRTAELRGVPWSEFDLDKALWLIPAARMKMRRAHLVPLSQQAVAVLRELERITGGYT 296

Query: 304 FIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAH 363
             FP    P KP +    N  LKR G+ GR   HG R   STTL+EQG+  + VE+ LAH
Sbjct: 297 LAFPGRNDPAKPMSEAAINQLLKRSGYDGRATGHGFRHTMSTTLHEQGYPSEWVETQLAH 356

Query: 364 VDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE 395
           VD N +R  YN   YLE R+ M+ W++ H++E
Sbjct: 357 VDKNSIRGTYNHAQYLEGRREMLQWYANHVDE 388