Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

 Score =  146 bits (369), Expect = 1e-39
 Identities = 120/418 (28%), Positives = 201/418 (48%), Gaps = 32/418 (7%)

Query: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60
           M +   KLT   +K + P +      DG GL L  + +G  QWI       +G+R  +  
Sbjct: 1   MPRPLYKLTAVAVKNAPPGKYS----DGGGLWLHKREDGGAQWILRVN--VHGRRREMGL 54

Query: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN 120
           G   ++SL +AR++    + L+  G+DP  +R+RQ++     + H  +++ +D F  ++ 
Sbjct: 55  GSVSEVSLKEAREAAERWRSLVRGGLDPIKERQRQRREAAR-NLHCLDDIARDAFESRKA 113

Query: 121 DVTPDYALDIWRS-LELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN 179
           ++  D     W S LE+H+ P +   PV  I   +I ++L PI      ET ++   RL 
Sbjct: 114 ELKGDGVAGRWFSPLEIHVLPRLGKVPVVDIDQTDIRDVLAPIW-HSKAETARKALNRLA 172

Query: 180 EVMNFATNCGL---IQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTR 236
             +  A   GL   +QA          ++ K EN+ A+   ++P   +++++ ++   T 
Sbjct: 173 ICLKHAAALGLSVDLQATDKARALLGKQRHKPENIPAMPWRDVPIFYASLSDGTV---TH 229

Query: 237 CLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRR----EHRIPLTEQMLALL 292
             L   + T  R A     R ++IN +  VWTIP E MK RR    + R+PL++   A L
Sbjct: 230 LALRLLILTGVRSAPLRFLREEQINGD--VWTIPGEAMKGRRGATADFRVPLSD---AAL 284

Query: 293 EVMKPISGH--RDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNE- 349
           EV++    H    F+FPS +  K   +  T +  ++R G A R   HG RS     + E 
Sbjct: 285 EVIEQARRHAREGFLFPSVK--KGVISDATMSRLMERAGMAAR--PHGFRSSLRDWIAEV 340

Query: 350 QGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTK 407
                D+ E+ L H+    V  AY RTD+LE+R+ +M  W+ H+    RG +   G +
Sbjct: 341 TEASHDVAETTLGHIIGGAVERAYRRTDFLEQRRALMVRWARHV-TGQRGQVIALGKR 397