Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  161 bits (407), Expect = 4e-44
 Identities = 116/399 (29%), Positives = 194/399 (48%), Gaps = 19/399 (4%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYP--D 65
           LTD +++  KPR+K Y + D DGL + +  +GS  + +NY    +G++  ++FG Y    
Sbjct: 2   LTDTKLRNLKPRDKLYKVNDRDGLYVAVTVSGSISFRYNY--AIHGRQETITFGRYGVGG 59

Query: 66  ISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPD 125
           I+L +AR+ L  AK++IA G  P  ++ R +   K+    TF    + W    Q     +
Sbjct: 60  ITLAEARERLGEAKKMIAAGKSPAKEKARDKARVKDAE--TFGAWAEKWLRGYQ---MAE 114

Query: 126 YALDIWRSLELH-IFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNF 184
              D+ RS+    +     ++ +  IT  ++  L   I  +G+  T   + + + +V  +
Sbjct: 115 STRDMRRSIYFRELKSKFGNQKLVEITHEDLRALTDAIVERGAPATAVHVREVVFQVYRW 174

Query: 185 ATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLH 244
           A   G    NP   ++       +    ALTP E+  +   +       + R   +  L 
Sbjct: 175 AIERGQKVENPAELVRPTTIARFEPRDRALTPDEIGLMYQYVERVGTAPSFRAAAKLLLL 234

Query: 245 TMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDF 304
           TM R +E + A W E+N+ E +WTIP ERMK+R  H + L+ Q L +   +K  +G  D+
Sbjct: 235 TMVRKSELTKATWSEVNFSEALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDY 294

Query: 305 IFPSDRAPKKPCNSQTAN--------MALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDL 356
           + PS      P +S T N        +A K      +   H LR  AST L+E G++ D 
Sbjct: 295 VLPSRYDSDAPMSSATLNQVLTLTYKLAQKEGKPLAKFGPHDLRRTASTLLHEAGYNTDW 354

Query: 357 VESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE 395
           +E  LAH +   VR+ YN+ +Y ++R  MM  W++ I+E
Sbjct: 355 IEKCLAH-EQRGVRAVYNKAEYRDQRVEMMQDWADMIDE 392