Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., phage integrase family protein (RefSeq) from Shewanella loihica PV-4

 Score =  521 bits (1342), Expect = e-152
 Identities = 244/404 (60%), Positives = 318/404 (78%)

Query: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60
           MA  T  LT+ +IK  KP  K+  L DG GL+LR++ NGSK W +NYY P   KR N+  
Sbjct: 1   MAVITTPLTNTQIKNQKPGPKDIVLSDGGGLQLRVRTNGSKLWNYNYYHPVTKKRVNIGI 60

Query: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN 120
           G YPDI L +AR+  L  ++L+A G+DP+  R+++    K+   +T +NV  +W  IK++
Sbjct: 61  GPYPDIPLAKAREIALEYRQLVACGVDPKSKREQESLKLKQEVLYTLKNVAAEWLEIKKS 120

Query: 121 DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE 180
           +VT  +A   W SLE H+FP + D P+  ITAP +I++ +PIEAKGSLET+KRL+QRLNE
Sbjct: 121 EVTKSHAAKTWSSLESHVFPELGDTPLNKITAPLVIKVFRPIEAKGSLETIKRLSQRLNE 180

Query: 181 VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE 240
           +MNF  NCG I +NPL GI+AAFKKPKKE+MA LTP+ELP LM  ++ ASIKR TRCL+E
Sbjct: 181 IMNFGVNCGYIDSNPLVGIRAAFKKPKKESMATLTPSELPLLMRHLSQASIKRVTRCLIE 240

Query: 241 WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG 300
           WQLHTMTRP+EA+ ARWDE++ +   WTIPAE+MK+RREH IPLT+QML +L+ +KPISG
Sbjct: 241 WQLHTMTRPSEAATARWDELDLDNLTWTIPAEKMKRRREHVIPLTQQMLGILDAIKPISG 300

Query: 301 HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA 360
           HRD+IFP+DR PK  CN+QTAN+ALKRMG  G+LVSHG+R+LASTTLNEQGF+ DL+E+A
Sbjct: 301 HRDYIFPADRDPKSHCNTQTANVALKRMGLKGKLVSHGMRALASTTLNEQGFESDLIEAA 360

Query: 361 LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT 404
           L+HVD NQVR+AYNR+D+LERR+PMM WWS+HIEEA++G+LSV+
Sbjct: 361 LSHVDANQVRAAYNRSDFLERRRPMMSWWSKHIEEASQGNLSVS 404