Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., hypothetical protein from Klebsiella michiganensis M5al

 Score =  169 bits (429), Expect = 1e-46
 Identities = 125/411 (30%), Positives = 197/411 (47%), Gaps = 39/411 (9%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPN----GSKQWIFNYYRPTNGKRANLSFGMY 63
           LTD + +  KP +K   L  G  + L + P     G   WIF Y  P   KR   S G Y
Sbjct: 4   LTDTKARHIKPGDKA--LPHGGVIGLTLNPTRANKGRGYWIFRYVSPVTQKRRQASLGTY 61

Query: 64  PDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHK-EIHEHTFENVTKD--------W 114
           P+IS+ +  K   + +E +A+ IDP +++  QQQ  K +    TF++  +         W
Sbjct: 62  PEISIAEVGKIASAMREQLAKNIDPLEEKSIQQQNEKRKASIPTFQSAAETLHPTLLPGW 121

Query: 115 FAIKQNDVTPDYALDIW-RSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKR 173
             IK            W  +L+ H FP +  K +  I A +I E+L PI       T KR
Sbjct: 122 KNIKHGKQ--------WITTLQTHAFPILGVKTLDTINAADIAEILSPIWLSHPA-TAKR 172

Query: 174 LTQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKK-----ENMAALTPAELPELMSA-IA 227
           + QR+  VM +    G  + NP+  +     +  K      +  A+    +P   +  + 
Sbjct: 173 VKQRIYTVMEWGLAQGYCKINPVDVVAHLLPQQNKLATRARHFPAMPWKAIPLFFANHLH 232

Query: 228 NASIKRTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQ 287
           + +    +R LL   + T  R  E    RW EIN ++++WTIP E+MK   +HR+PLT Q
Sbjct: 233 SDNAYDVSRALLAIVILTACRSGEVRAMRWCEINEKQQIWTIPPEKMKGGIQHRVPLTNQ 292

Query: 288 MLALLEVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRL-----VSHGLRSL 342
            + ++  MK    H+D +FPS R  +   +       L+R+  +  +      +HG RS 
Sbjct: 293 AIKIILKMK--GRHKDLVFPSVRK-QTVLSDMALTSFLRRVEASSDIPDRVATAHGFRSS 349

Query: 343 ASTTLNEQGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI 393
                +E G+  DL E ALAH   ++V +AY+RTD LE+R+PMM  W++++
Sbjct: 350 FRDWCSEHGYSRDLAERALAHAIQSKVEAAYHRTDLLEQRRPMMQAWADYV 400