Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., prophage P4 integrase from Klebsiella michiganensis M5al

 Score =  215 bits (547), Expect = 2e-60
 Identities = 131/396 (33%), Positives = 204/396 (51%), Gaps = 26/396 (6%)

Query: 20  EKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDISLLQARKSLLSAK 79
           EK+  L DG GL L IK NGS  W   Y    NG+   +S G Y  I L  AR+     K
Sbjct: 26  EKDSRLSDGSGLYLLIKSNGSAYWRLRYR--FNGEDRLISLGEYKYIPLALAREKREEVK 83

Query: 80  ELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYALDIWRSLELHIF 139
             IA+GIDP+  +  +  +       TF  V   W A      + +++  I +SL   +F
Sbjct: 84  RNIARGIDPRGTKDEEGFL-------TFREVAMQWHA-SNRQWSKEHSRRILKSLLDEVF 135

Query: 140 PHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQANPLTGI 199
           P   D  +K +   ++++ +K ++  G LE   R+ QR+N VM  A + GL++ NP+   
Sbjct: 136 PVFGDDNIKLLKTQDLLKPVKQVQDSGRLELASRIYQRINSVMTLAVDNGLLEFNPIAHK 195

Query: 200 KAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMTRPAEASGARWDE 259
             A  K   E+ AAL    +PE +  I     +R T+  + + LHT  R +E   ARW E
Sbjct: 196 SGALIKRNSEHRAALELENIPEFLKRIEKFKGRRLTQLAMTFLLHTFVRSSELRFARWKE 255

Query: 260 INWEEKVWTIPAER------------MKKRREHRIPLTEQMLALLEVMKPISGHRDFIFP 307
            + E  +WTIP+ R             K +  H +PL+ Q  ++++ +K I+G R F+F 
Sbjct: 256 FDLENSLWTIPSVREEIPGVKYSYRGSKMKTPHIVPLSHQACSIIQEIKSITGERIFVFT 315

Query: 308 SDRAPKKPCNSQTANMALKRMGFAGR--LVSHGLRSLASTTLNEQG-FDPDLVESALAHV 364
           SD  PKKP +  T N AL+ MG+  +  L SHG R++A + L E G +  D +E  ++H 
Sbjct: 316 SDHFPKKPMSENTINHALQSMGYDTKKDLCSHGFRTMACSALIESGKWSRDAIERQMSHQ 375

Query: 365 DDNQVRSAY-NRTDYLERRKPMMCWWSEHIEEAARG 399
           + N VR+AY ++ + +  R+ MM WWS+++ +   G
Sbjct: 376 ERNNVRAAYIHKAELIPERQKMMQWWSDYLMQLQHG 411