Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., site-specific recombinase, phage integrase family protein from Klebsiella michiganensis M5al

 Score =  246 bits (628), Expect = 9e-70
 Identities = 130/405 (32%), Positives = 225/405 (55%), Gaps = 19/405 (4%)

Query: 6   VKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPD 65
           +KL  ++++ +KP++K Y + DG GL L +   GSK W   Y RP++ K   L+FG++P 
Sbjct: 1   MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT 60

Query: 66  ISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPD 125
           ++L QAR     AK+L+ QGIDP+ ++K  Q  +   +  TFE + ++W A  +   + D
Sbjct: 61  VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHASNKR-WSED 117

Query: 126 YALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFA 185
           +   + R LEL+IFP+I    ++ +    ++  +K ++A G  +  +RL QR+  +M +A
Sbjct: 118 HRSRVLRYLELYIFPYIGTSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA 177

Query: 186 TNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHT 245
                I +NP + +  A    K  +  AL  +  PE ++ +A    +  TR  +E  L T
Sbjct: 178 VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT 237

Query: 246 MTRPAEASGARWDEINWEEKVWTIPAER------------MKKRREHRIPLTEQMLALLE 293
             R +E   ARW+E ++++ +W +PA+R            MK + EH +PL+ Q + LL 
Sbjct: 238 FVRSSELRFARWEEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLA 297

Query: 294 VMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGR--LVSHGLRSLASTTLNEQG 351
            +K ISG ++ +FP D    K  +  T N AL+ MG+  +  +  HG R++A   L E G
Sbjct: 298 QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG 357

Query: 352 -FDPDLVESALAHVDDNQVRSAYNRT-DYLERRKPMMCWWSEHIE 394
            +  D +E  L+H + N VR+AY  T ++L+ R+ M+ WW+++++
Sbjct: 358 LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD 402