Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., Prophage integrase IntA from Enterobacter sp. TBS_079

 Score =  245 bits (625), Expect = 2e-69
 Identities = 141/403 (34%), Positives = 226/403 (56%), Gaps = 20/403 (4%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           L+D +++++KP  K Y L DG+G+ L + PNGSK W   Y     GK   L+ G YP++S
Sbjct: 3   LSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FGGKEKMLALGKYPEVS 60

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L  AR     A++L+A G+DP +++K  + V +E    TFE V +DW A  Q   T  ++
Sbjct: 61  LADARARRDEARKLLANGVDPSENKKAVK-VEQEQEAITFEVVARDWHASNQKWST-SHS 118

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
             + +SLE ++F  +  + +K I   +++  +K +E  G LE   RL QR   +M FA  
Sbjct: 119 ARVLKSLEDNLFASVGKRNIKDIGTRDLLVPIKAVEKSGRLEVAARLQQRTTAIMRFAVQ 178

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMT 247
            GLI  NP   I  A    K+++ AAL    +PEL+  I N + +  TR  ++  L    
Sbjct: 179 NGLIDYNPAQEIAGAIATAKRKHRAALDLNRIPELLHRIDNYTGRPLTRLAVDLTLLVFI 238

Query: 248 RPAEASGARWDEINWEEKVWTIPAER------------MKKRREHRIPLTEQMLALLEVM 295
           R +E   ARW E+++E  +WTIP ER             K R  H +PL+ Q LA+LE +
Sbjct: 239 RSSELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKI 298

Query: 296 KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGR--LVSHGLRSLASTTLNEQG-F 352
           K ++G+R+ IF  D  P+KP +  T N AL+ MG+  +  +  HG R++A ++L E G +
Sbjct: 299 KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKKEVCGHGFRTMACSSLIESGLW 358

Query: 353 DPDLVESALAHVDDNQVRSAY-NRTDYLERRKPMMCWWSEHIE 394
             D VE  ++H + + VR+AY ++ ++L  R+ M+ WW++ ++
Sbjct: 359 SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADFLD 401