Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  249 bits (636), Expect = 1e-70
 Identities = 135/392 (34%), Positives = 225/392 (57%), Gaps = 10/392 (2%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LTD + +A+KP EK Y L+DG G+ L + P+G+K+W   Y    NGK   LS G+YP++ 
Sbjct: 2   LTDIKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYR--VNGKEKRLSLGVYPNVG 59

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L +AR+     + LIA+GIDP   R  Q+         +FE V ++W  ++     P + 
Sbjct: 60  LKEAREKRDELRRLIAEGIDPAAQRCPQKVAPTA---DSFEMVAREWMDLRSPAWAPRHL 116

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
               + LE +IFPHI   P+  I   +++  L+ +E +G++E  ++     ++V  +A  
Sbjct: 117 STTCQRLEAYIFPHIGPLPIDQIGPLDVLNALRIVEKRGAVEAARKTLSICSQVFRYAVA 176

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALT-PAELPELMSAIANASIKRTTRCLLEWQLHTM 246
              IQ++P   ++ A K  +  + AA+  P ++  LM AI   S     RC L +   T 
Sbjct: 177 SARIQSDPCRDLRGALKTRQPGHYAAIVDPKDVGALMRAIDGYSGAMVVRCALRFLALTF 236

Query: 247 TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG--HRDF 304
            RP E   A W+E + E ++WTIPA +MKKRREH +PL+ Q LA+L  ++  +   +   
Sbjct: 237 VRPGELRAAEWNEFDMERRIWTIPAHKMKKRREHIVPLSTQALAVLRDVRATAPRLNSPM 296

Query: 305 IFPSDR-APKKPCNSQTANMALKRMGFA-GRLVSHGLRSLASTTLNEQGFDPDLVESALA 362
           +F S R    +  +  T  +AL+ +G+  G + +HG R++AS+ LN  G++PD++E  LA
Sbjct: 297 VFQSVRLRSDRGLSENTLLVALRSLGYGQGTMTAHGFRAMASSLLNGLGYNPDVIERQLA 356

Query: 363 HVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE 394
           H++ N++R+AY+RT+YLE R  MM  ++++++
Sbjct: 357 HIEGNKIRAAYHRTEYLEERTAMMQAYADYLD 388