Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., integrase from Paraburkholderia graminis OAS925

 Score =  159 bits (402), Expect = 1e-43
 Identities = 125/394 (31%), Positives = 195/394 (49%), Gaps = 22/394 (5%)

Query: 11  KEIKASKPREKEYNLF--DGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDISL 68
           K++ A+K R+++   +  DG GL L++ P+GSK WIF Y R  N K   +  G Y ++SL
Sbjct: 6   KKLSATKVRQEKTPGYYSDGGGLYLQVSPSGSKSWIFRYAR--NKKSHEIGLGAYLNVSL 63

Query: 69  LQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYAL 128
             AR+     +  +  G DP     RQ +  K   + TF   +  +    ++    +   
Sbjct: 64  ESAREKAEGMRRALGNGDDPL--AMRQSERAKIAAKMTFTECSDAYIEAHRHGWKNEKHA 121

Query: 129 DIW-RSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
           + W  +L  +  P I  K +  +   +I  +L+PI    + ET  R+  RL +V+ +AT 
Sbjct: 122 EQWTNTLATYAAPFIGKKDIALVDTHDITRVLEPIWTTKN-ETASRVRGRLEKVLAWATT 180

Query: 188 CGLIQA-NPLTG---IKAAFKKP----KKENMAALTPAELPELMSAIANASIKRTTRCLL 239
            GL    NP      +     KP    K E+ AAL   ++   M  +    ++      L
Sbjct: 181 RGLRSGENPARWKGHLDTLLAKPSAVQKGEHHAALPYGDIGTFMDDLRG--MQGVAARAL 238

Query: 240 EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS 299
           E+ +   +R AE  GA+W EI+ + K+WT+PAERMK ++EHR+PL+++ +A+L+ M+  +
Sbjct: 239 EFCILNASRTAEIIGAQWSEIDLDAKLWTVPAERMKMKKEHRVPLSKRAVAILKEMQ-AA 297

Query: 300 GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNE-QGFDPDLVE 358
            H DF+FP  R      N  T    LKRM     L  HG RS       E   F  +L E
Sbjct: 298 RHGDFVFPGMREGTGLSN-MTLLAVLKRME-RQNLTVHGFRSTFRDWAAECTNFPRELAE 355

Query: 359 SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEH 392
            ALAH   ++V +AY R D L +R  MM  W+ +
Sbjct: 356 KALAHAVRSEVEAAYQRGDLLAKRGKMMEAWAAY 389