Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  417 bits (1073), Expect = e-121
 Identities = 214/410 (52%), Positives = 272/410 (66%), Gaps = 2/410 (0%)

Query: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60
           M ++T KLT K +  +K   K Y L DG  L L ++  G K W F Y RP+  K      
Sbjct: 1   MGRSTNKLTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGL 59

Query: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN 120
           G YPD+SL +AR   L A++ +A+GIDPQ  +   +      +  T +++ + W   KQ 
Sbjct: 60  GSYPDVSLAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQG 119

Query: 121 DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE 180
            + P      WR LEL+ FP +    +  +TAP  I  LKP+E KG LETVKR  Q LNE
Sbjct: 120 SIKPKTIEGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNE 179

Query: 181 VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE 240
           +MNF+ N G I ANPL+GI+  F+K K E++ AL PAEL EL+  IANA++  TTRCL+E
Sbjct: 180 IMNFSVNSGYIHANPLSGIREVFRKSKVEHLKALKPAELAELLQTIANANLLLTTRCLIE 239

Query: 241 WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG 300
           WQLHTMTRP EA+GARW+EI+++ K+WTIP  RMK  REH IPLTE  L +LE +KPIS 
Sbjct: 240 WQLHTMTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPISE 299

Query: 301 HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA 360
              F+FPS + P+K  + +T N AL RMG  GR   HGLRSLASTTLNEQGFD D++E+A
Sbjct: 300 QSQFVFPSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAA 359

Query: 361 LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT-GTKQL 409
           LAHVD NQ+RSAYNRT YLERR  +M WWS HI  AA GSLSVT G+++L
Sbjct: 360 LAHVDKNQIRSAYNRTTYLERRTKLMEWWSNHIATAAVGSLSVTAGSRKL 409