Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Chemotactic transducer from Pseudomonas fluorescens FW300-N2E2

 Score =  222 bits (566), Expect = 3e-62
 Identities = 172/606 (28%), Positives = 290/606 (47%), Gaps = 31/606 (5%)

Query: 1   MKFSIKLLM----IFTSIIITISSILTYFQMHGTNEYLDRTIKDT---ISETLDSLEDKI 53
           +KF  K+L+    I  ++ ++ S    + Q   T E L R ++ T   +   LDS     
Sbjct: 5   LKFGHKILLGACVIVMAVFLSFSLFNDHRQQASTREALHRNLQATGQLLGANLDSWLAGR 64

Query: 54  NLSIESKVDVSKSVIDIYENLLEGESP--LSKFKDVDVNHLSNVFQLFGYADERTGEIIT 111
            L IE             E +    +P  +      D+   + +    G  D R      
Sbjct: 65  ILLIEGAA----------ETIAADPTPQTIGAILSQDIITKTFIASYVGLEDSR----FF 110

Query: 112 NDPNFKVPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVI 171
             P   +P G+D R R+WY +A +     L+EPY+    + L++T +API       GV+
Sbjct: 111 IHPERVMPDGYDVRQRAWYKDAARSLEPVLTEPYIGAGIDYLIMTQAAPIKVDGKAVGVL 170

Query: 172 FFDIPLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSES 231
              + L+ + ++I + +    G  F+V + GKI+    N    K L   F   P S++ +
Sbjct: 171 GASLSLEQLAKIINAVDLNGIGYAFLVSDDGKILVHPDNTRVTKTLAQAFPEGPPSINSA 230

Query: 232 KTK-DKNGVNYDVLIKMSDFGG-----WNLVSIIDHDKARSDIITLRNNSIFTAVILASV 285
             +  +NG     ++  +   G     W++   +D DKA + +   R +++   +I   V
Sbjct: 231 LNEVQENGRTR--IVTFTPINGLPSLHWSIGLSVDKDKAYAVLHAFRASALVATLIAMLV 288

Query: 286 FFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQ 345
              +L   +  +++PL  +  AM +I+ G  DLT R+ + +  EF  +   FN FV  +Q
Sbjct: 289 TVGLLGLLINALMRPLRSMGSAMQSIADGEGDLTQRLHSLSRDEFGMMAGGFNRFVERIQ 348

Query: 346 SIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITS 405
             + EV  +S ++  +  +  +       S   Q      +A+++NE+ A + +IA+  +
Sbjct: 349 QSIREVLASSVQLTQLAAQVSQASNASLKSSDTQAALTHNVATAINELGAAAQEIARSAA 408

Query: 406 EASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAIND 465
            AS   S    Q  EG   V     ++  L  ++  T+  I+ LN +T  I  IL  I  
Sbjct: 409 HASSRASDTRDQTQEGQSVVQRSISAMSQLSSQVVNTRQDIESLNEKTLKIGRILDVIKG 468

Query: 466 IADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLL 525
           I+DQTNLLALNAAIEAARAG+ GRGFAVV+DEVR+LA +TQ+S + I S+I  LQ  +  
Sbjct: 469 ISDQTNLLALNAAIEAARAGDAGRGFAVVSDEVRTLAHRTQQSAQEIHSMIEELQAGAGS 528

Query: 526 SVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSN 585
           +V  M ES   + + +T +  + + L+ +   + +I +I   VATA  EQ+ V + ++ +
Sbjct: 529 AVSAMLESQRHSDDNVTTARLAGERLNRVLMGIGEIDEINLSVATATEEQTSVVDNLDRD 588

Query: 586 SISIKD 591
              I D
Sbjct: 589 ISHIND 594



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 355 SEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKI 414
           S+++  +   TQ+  +  ++ + +         S+M E    S+        A E  +++
Sbjct: 498 SDEVRTLAHRTQQSAQEIHSMIEELQAGAGSAVSAMLESQRHSDDNVTTARLAGERLNRV 557

Query: 415 N---GQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQ-TQNIDVILKAINDIADQT 470
               G+++E   +V++ TE   ++V+ LD+  S I DLN++   N+   L+A  ++ +Q+
Sbjct: 558 LMGIGEIDEINLSVATATEEQTSVVDNLDRDISHINDLNQEMVGNLQSTLQACTELENQS 617

Query: 471 NLL 473
             L
Sbjct: 618 RRL 620