Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  233 bits (595), Expect = 1e-65
 Identities = 183/637 (28%), Positives = 308/637 (48%), Gaps = 37/637 (5%)

Query: 1   MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESK 60
           MKFS K+L+    ++    +    F  +   + L+ + + ++ E        I   ++ +
Sbjct: 1   MKFSHKILLAAALVVAVAFACFILFNDYRQRQSLNASTETSMQELGSLTSRNIQTWVDGR 60

Query: 61  VDVSKSVIDIYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVPT 120
           + + +S+    +   +G S  S  + V +   ++ FQL  +         T+   F VP 
Sbjct: 61  IQLLQSLAQ--QIAADGSSADSLKRAVGLPAYTSNFQLSYFGG-------TDGVMFSVPA 111

Query: 121 G-----FDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDI 175
           G     +DPR R WY  A       ++EPY+   + KL++T + P+ ++N + GV   DI
Sbjct: 112 GNRAADYDPRARGWYKAANSAQQTIVTEPYIAASSGKLVITVATPVQHQNQMIGVAGADI 171

Query: 176 PLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSES-KTK 234
            L  V  +I S N    G  FIV   GKI+    +    K L   + +    +S   K  
Sbjct: 172 DLSSVSAIINSLNFGGHGHAFIVSADGKILIHPDSKRVLKTLAEAYPNGAPQISPGVKEV 231

Query: 235 DKNGVNYDVLIKMSDFGG-----WNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAI 289
           D +G      I  +   G     W +  ++D D A + +   R +++   VI      A+
Sbjct: 232 DLDGKTQ--FISFTHVNGVPGADWYVALVLDKDTALAMLSEFRTSALIAMVIAVVFIIAL 289

Query: 290 LLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVS 349
           L   +R++++PL  +  AM +I+ G  DLT R+      EF  +  SFN FV  + + + 
Sbjct: 290 LGMLIRVLMQPLLTMGRAMHDIAEGEGDLTRRLVIHGHDEFGALGTSFNRFVERIHTSIR 349

Query: 350 EVKMNSEKINCITTETQELVEVCNNSVAD---QYRELDMLASSMNEMVATSNQIAQITSE 406
           EV   + ++N +      +V   N+S+ +   Q      +A+++N++ A + +IAQ  + 
Sbjct: 350 EVASATGQVNEVALR---VVSASNSSMFNSDQQASRTSSVAAAINQLGAAAQEIAQNAAL 406

Query: 407 ASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDI 466
           AS+ +S       +G   V     ++  L  K+  +   I+ LN  T NI  IL+ I  I
Sbjct: 407 ASQHSSDARSLAEDGQQVVDKTIAAMQQLSAKISDSCGNIETLNSNTVNIGQILEVITSI 466

Query: 467 ADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLS 526
           + QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ+S + +  +I  LQ  +  +
Sbjct: 467 SQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQKMIEELQVGAREA 526

Query: 527 VHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEIN--- 583
           V  M +S   +  ++ I+  + + L +++Q + +I  +   VATA  EQ+ V E IN   
Sbjct: 527 VLTMTDSQRQSESSVGIANQAGERLGSVTQRIGEIDGMNQSVATATEEQTAVVESINVDI 586

Query: 584 -----SNSISIKDKADTLSSLGNKISQQAYSQKALIG 615
                 N   +++   TL +  + + QQA   K L+G
Sbjct: 587 TEINTLNQEGVENLQATLRACAD-LEQQAARLKQLVG 622