Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 612 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  202 bits (514), Expect = 3e-56
 Identities = 157/609 (25%), Positives = 283/609 (46%), Gaps = 27/609 (4%)

Query: 36  RTIKDTISETLDSLEDKINLSIESKVDVSKSVIDIYENLLEGESPL--------SKFKDV 87
           R I   I +  D+ +  ++      V VS   +  Y+       PL         +F   
Sbjct: 9   RQIDGNIRQFFDASQQNVDQMATDPVYVSVGALKNYQTGDAASRPLPPAAQQLIERFAHY 68

Query: 88  DVNHLSNVFQLFGYADERTGEIITNDPNFKVPTGFDPRTRSWYLNA-----KKLNTFSLS 142
              H S      G  D    +   +DP       +DPR+R WY  A     K + T +  
Sbjct: 69  GAAHPSAAILSIGLEDGSYAKW-PDDPQL---ANYDPRSRPWYKAAMASPGKTVRTPAFY 124

Query: 143 EPYVDLITEK--LMVTTSAPIYNKNDLTGVIFFDIPLDDVQELIKSYNPFDAGTIFIVDN 200
             Y D   E   L+ T  A I +   + GV+  ++ L ++ EL+KS    ++G + ++++
Sbjct: 125 PAY-DYGKEDAALVGTARAMITSDGIVKGVLAVNVSLKNLTELVKSIKLGESGYVMLIED 183

Query: 201 SGKIIFGNKNDISG-----KNLFGDFDSFPLSVSESKTKDKNGVNYDVLIKMSDFGGWNL 255
              I+  +  D +      K+L   +         S   + NG+ Y   +  S   GW  
Sbjct: 184 G--IVLVDPRDTTHSFKPLKDLGAAYAKLATIPQGSTEVELNGIPYMANVWTSPDLGWRY 241

Query: 256 VSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGS 315
           + +I+  +  S    +   +      L  +F  + +   + ++KP+ Q++  + +I+ G 
Sbjct: 242 IGLIERSEVMSAATRMTYLTTLIVGGLTVIFALVAVAFSKSIVKPISQVSTGLQSIAQGE 301

Query: 316 ADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNS 375
            DL   +    + E +++   FN F+  ++ ++  +   S  +   +    E+    N +
Sbjct: 302 GDLRRELEFQGNDETAELAGWFNKFLSAIRQLIQHIGAASSNLQNASRVNSEVANNMNEA 361

Query: 376 VADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNL 435
              Q   +++++++ NEMVAT+N++A+  S A+E     + +V EG   +   T++V  L
Sbjct: 362 AGRQREAVELVSTAFNEMVATANEVARSCSGAAESAENGHRRVAEGKQQIEITTDNVNRL 421

Query: 436 VEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVA 495
             +L ++   + +L   +++I+ IL  I  IA+QTNLLALNAAIEAARAG+ GRGFAVVA
Sbjct: 422 GRRLTESSQSMTELEAGSRSINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVA 481

Query: 496 DEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNIS 555
           DEVR+LA +T +ST  I  ++  L   +   +  M     ++  +++    ++   + I 
Sbjct: 482 DEVRALAKRTSDSTGEIEQLLGALGSKTQEVMGKMGSCLELSHASVSSIESTRDSFEGIQ 541

Query: 556 QSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIG 615
            SV +I D   Q++ AA EQ  V+EEIN +   I D+A  + SL N     +    +L  
Sbjct: 542 LSVNEIRDQNLQISAAAEEQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGKLSSLSD 601

Query: 616 HQDDLISKF 624
             + L+ +F
Sbjct: 602 ELNGLVGRF 610