Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  259 bits (662), Expect = 2e-73
 Identities = 178/595 (29%), Positives = 313/595 (52%), Gaps = 25/595 (4%)

Query: 1   MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRT-----IKDTISETLDSLEDKINL 55
           +KFS K+L+  + ++I   ++ T++     N+YL R      +K+ +++T +S    I  
Sbjct: 5   LKFSHKILLAASLVVIAAFTLFTFY-----NDYLQRNALHVQLKENLNQTSESTAGNIRN 59

Query: 56  SIESKVDVSKSVIDIYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPN 115
            +  ++ +   V ++ EN    +SP  + + +    L   F    Y     G  +T  P+
Sbjct: 60  WLSGRILL---VENLAENASSPQSPQEQNRVLGQPTLIATFMSI-YQGRSDGSFVTQPPD 115

Query: 116 FKVPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDI 175
             +   +DPRTR WY++A +     L+EPY+D +T+ L+VT + PI   + ++GVI  D+
Sbjct: 116 -DMSADYDPRTRPWYVDALRAGKTILTEPYLDAVTKGLVVTLATPIKGDSGVSGVIGGDL 174

Query: 176 PLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKD 235
            L+ + ++I S      G  F+VD +G+I+      +  K L   + +    +S+  ++ 
Sbjct: 175 SLEILVKMISSLRMHGDGYAFLVDANGRILVHPDTSLVMKTLAEVYPANTPRLSQDLSES 234

Query: 236 KNGVNYDVLIKMSDFG----GWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILL 291
           +      +L      G     W +   +D D A + +   RN++I   VI   +   +L 
Sbjct: 235 EYAGKTQILTFAHVDGLPSVNWYVGVAMDKDIAYAALGEFRNSAIVATVIAVVLIILLLG 294

Query: 292 FTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEV 351
             + ++L+PL+ +  AM +I++G  DLT R+   +  EF  + N FN+FV  +   + EV
Sbjct: 295 MLLSVLLRPLNLMGRAMHDIAAGEGDLTKRLVIESQDEFGHLGNGFNLFVERIHDSMREV 354

Query: 352 KMNSEKINCITTETQELVEVCNNSVAD---QYRELDMLASSMNEMVATSNQIAQITSEAS 408
             ++ ++N +      ++   N+S+ +   Q    + +A+++NE+ A + +IAQ  + AS
Sbjct: 355 ASSTVQLNEVALR---VLNASNSSMLNSDQQSHRTNSVAAAINELGAATQEIAQNAARAS 411

Query: 409 EITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIAD 468
             +S      ++G   V    E++  L +++      I+ LN +T NI  IL  I  I+ 
Sbjct: 412 GHSSDARTLASDGQDVVGQNIEAMSRLSKRISSASGQIETLNTKTANIGQILDVITGISQ 471

Query: 469 QTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVH 528
           QTNLLALNAAIEAARAGE GRGFAVVADEVRSLA +TQES   +  +I  LQ  +  +V 
Sbjct: 472 QTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAHRTQESASQVQEMIEQLQSGAREAVS 531

Query: 529 VMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEIN 583
           +M++S   + ET+ I+  +   L+++++ + +I  +   VA A  EQ+ V E IN
Sbjct: 532 IMNDSQRESVETVGIANKAVASLEHVTERIGEIDGMNQSVAAATEEQTAVVEAIN 586