Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  181 bits (458), Expect = 1e-49
 Identities = 114/367 (31%), Positives = 197/367 (53%), Gaps = 9/367 (2%)

Query: 260 DHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLT 319
           + D A + ++T     +   V+L  +F AIL+   R + +PL     A   I+ G  DLT
Sbjct: 285 EKDSAVTQLLT-----VAVIVLLLGIFAAILI--TRQITRPLDSTVIAARRIADG--DLT 335

Query: 320 VRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQ 379
             +  +   E   + N+      +L++++  +     +I     E   + E  +  V  Q
Sbjct: 336 NDLSTTRQDELGLLQNTMQHMTVSLRTLIGGISNGVTQIATAAEELSAVSEQTSAGVTQQ 395

Query: 380 YRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKL 439
             E+D +A++MN+M +T  ++AQ T +AS+   + + +   G   V   T  +  L  ++
Sbjct: 396 KLEVDQVATAMNQMASTVQEVAQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEV 455

Query: 440 DKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVR 499
            +    +Q L + +  I  ++  I  +A+QTNLLALNAAIEAARAGE GRGFAVVADEVR
Sbjct: 456 GQLGEAMQRLIQDSDKIGGVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 515

Query: 500 SLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVI 559
           SLA +TQ ST  I ++I  LQ+ +  +  +M+ S      T+ ++  +++ L  I+ S++
Sbjct: 516 SLAQRTQSSTTEIEALIKSLQDGTGAASELMNASRQRTEGTVALARQAEESLLEITHSIV 575

Query: 560 QIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDD 619
            I  ++ Q++ AA EQS V++EIN + IS++D AD  ++   + +        L  +  D
Sbjct: 576 TIEQMSQQISAAAEEQSAVTDEINRSVISVRDIADQSATATEQSAASTVELARLGSNLQD 635

Query: 620 LISKFII 626
           ++++F I
Sbjct: 636 MVARFRI 642