Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  177 bits (449), Expect = 9e-49
 Identities = 105/298 (35%), Positives = 167/298 (56%), Gaps = 1/298 (0%)

Query: 294 MRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKM 353
           +R +L  L+ L D M+++   S DL  R+PN +D E  ++  +FN      Q +V+ V  
Sbjct: 160 IRFLLSQLNALKDVMLHVEK-SGDLAARVPNRSDDEVGQMAKAFNAMQAGYQRVVNTVSQ 218

Query: 354 NSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSK 413
            + +++         ++     +  Q  E D +A+++NEM AT + IAQ  +   + +  
Sbjct: 219 TAGRLDQGAAHLAAGMKEVRQGMLGQQSETDQVATAINEMTATVHHIAQHATATRDQSQT 278

Query: 414 INGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLL 473
            +     G   V  V  S+  L   + +T  +IQ +   +Q I+ ++  I+ IA+QTNLL
Sbjct: 279 ADALAGSGKVVVDRVQVSIAGLSSGVQQTAEMIQRMAEDSQKINGVVNVIHSIAEQTNLL 338

Query: 474 ALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDES 533
           ALNAAIEAARAGE GRGFAVVADEVR+LA + Q ST  I +++  LQ  +  +V  M ES
Sbjct: 339 ALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQTSTDEITTMVSTLQSGTRDAVDFMQES 398

Query: 534 FNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKD 591
            + A E +  + ++   L  I+ +V Q+ +   Q+A AA +QS V+EE+N   +SI+D
Sbjct: 399 SHKAEECLQQAREAGDALAAIAGAVAQMRESNTQIAVAAQQQSQVAEEMNRAVVSIRD 456