Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  239 bits (611), Expect = 2e-67
 Identities = 190/635 (29%), Positives = 317/635 (49%), Gaps = 37/635 (5%)

Query: 1   MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKIN-LSIES 59
           +KF  K+L+    +++   ++ T +     N+YL R    TI++ L+S   +   L+  S
Sbjct: 3   LKFRHKILLAAAGVVVLAFALFTLY-----NDYLQRK---TINQNLESSVGQAGQLTASS 54

Query: 60  KVDVSKSVIDIYENLLEGESPLSKFKD----VDVNHLSNVFQLFGYADERTGEIITNDPN 115
             +     I + ENL +  +      D    V  + L + FQ F Y  +  G   T  PN
Sbjct: 55  VQNWLSGRILVLENLTQNVAFQGVNSDLSGLVSQSALVSTFQ-FTYVGDSKGTF-TQRPN 112

Query: 116 FKVPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDI 175
             +P G+DPR R WY +        LS PY+  +   L+VT ++P+     +TGV+  D+
Sbjct: 113 VDMPAGYDPRQRPWYKSTVDAGKTILSAPYLASVGG-LVVTIASPVKAAGQVTGVVGGDL 171

Query: 176 PLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKD 235
            LD + ++I S      G  F+V   G+II     +   KNL   +    +S+ +++ ++
Sbjct: 172 SLDTLVKIINSVEFGGLGYAFLVSGDGQIIVSPDKEQVMKNLKDIYPGQTISL-DARLRE 230

Query: 236 KNGVNYDVLIKMSDFGG-----WNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAIL 290
                   L+  +   G     W +   ID DKA + +   R++++   +I  +V   +L
Sbjct: 231 VTLNGQQRLLSFTPITGLPSADWYIGLSIDKDKAYAPLSQFRSSAMVAVLIAVAVIALLL 290

Query: 291 LFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSE 350
              +R +++PL  +  AM +I+ G  DLT R+      EF+ +  SFN FV  + + + E
Sbjct: 291 SLLIRALMRPLTDMGRAMQDIAQGEGDLTRRLSIQGKDEFAALGGSFNQFVERVHASIVE 350

Query: 351 VKMNSEKINCITTETQELVEVCNNSVA---DQYRELDMLASSMNEMVATSNQIAQITSEA 407
           V   + +++ ++   Q +V   N+S+    +Q    + +A+++NE+ A + +IA+  S+A
Sbjct: 351 VSSATLQVHDLS---QRVVNSSNSSIVGFDEQSARTNNVAAAINELGAATQEIARNASDA 407

Query: 408 SEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIA 467
           S   S+   Q  +G   V     ++  L  K+  + + I+ LN  T+NI  IL  I  I+
Sbjct: 408 SIQASEARNQAEDGQVVVEKTIHAMSALSAKISDSCTQIEQLNASTENIGHILDVIKGIS 467

Query: 468 DQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSV 527
            QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ S   I  +I  LQ  S  +V
Sbjct: 468 QQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQTSADEIHKMIGSLQSGSQHAV 527

Query: 528 HVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEIN---- 583
             M+ES   + E++ ++  +   L ++++ +  I  +   VA A  EQ+ V E +N    
Sbjct: 528 LNMNESQTSSQESVEVANQAGSRLRDVTRRIGDIDGMNQSVAAATEEQTAVVETLNIDIN 587

Query: 584 ----SNSISIKDKADTLSSLGNKISQQAYSQKALI 614
                N   + +  +TL      +SQQA   K L+
Sbjct: 588 QINTLNQQGVANLNETLKDCA-ALSQQAGRLKQLV 621