Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 621 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  189 bits (481), Expect = 2e-52
 Identities = 120/340 (35%), Positives = 190/340 (55%), Gaps = 11/340 (3%)

Query: 261 HDKARSDIITLRNNSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTV 320
           HD+    +          AV++A V F I+    R ++ P++ +   + ++     +LT+
Sbjct: 260 HDEEGDSVAMATTLFAVIAVLVAIVTFMII----RAIITPINNINQVISHVGKDK-NLTL 314

Query: 321 RIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQEL---VEVCNNSVA 377
           R       E ++I   FN  V + ++++ +V   ++ +N +    QEL       ++ V 
Sbjct: 315 RCDTQGGDEIAEIGQHFNEMVESFRALIQQV---NDAVNVMNESCQELSANATQASDGVL 371

Query: 378 DQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVE 437
            Q  E DM+A+++ EM AT ++IA+ T  A+E  +  +     G  +V    E + +L +
Sbjct: 372 RQLNETDMVATAITEMGATIDEIAKNTELAAERANHTHTNAQVGQQSVEQTIEKIQSLAQ 431

Query: 438 KLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADE 497
           +L+ + SV+ +L R +  I  +L  I  IA+QTNLLALNAAIEAARAGE GRGFAVVADE
Sbjct: 432 QLNNSASVVAELERDSGTIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 491

Query: 498 VRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQS 557
           VRSLA++TQEST+ I  II  LQ  +   V +M+ S     E+   +A +   L  I+Q 
Sbjct: 492 VRSLAMRTQESTEEIAGIIQTLQSRTRSIVQLMEASQRQGGESAEQAASAGTMLAQINQD 551

Query: 558 VIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLS 597
           V  I+D++ Q+A A  EQS V+ E+N N + I+D A+  S
Sbjct: 552 VTNIMDMSTQIAAAIEEQSSVAAEVNKNVVVIRDIAEESS 591