Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  199 bits (507), Expect = 3e-55
 Identities = 154/533 (28%), Positives = 260/533 (48%), Gaps = 38/533 (7%)

Query: 122 FDPRTRSWYLNAKKLNTFSLSEPYVDLITE---KLMVTTSAPIYNKNDLTGVIFFDIPLD 178
           F  R   WYL AK      L EPY+  I+     LM + + P+       GVI  D+ L 
Sbjct: 177 FGVREAEWYLCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVVVGGSFRGVIGVDVNLP 236

Query: 179 DVQELIKSYNPF---DAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTK- 234
             Q+LI   +         + ++   G ++  +  D   + L    +S   S++   T  
Sbjct: 237 VFQKLIDELSASLYQGKAKVTLLSQKGLVVAASHYDKKARPLG---ESIAPSLASQLTGL 293

Query: 235 ----------DKNGVNYDVLIKMSDFGGWNLVSIIDH----------DKARSDIIT-LRN 273
                     D   V Y + I ++    W+LV  +            DKA S + + L +
Sbjct: 294 HRQGGYLEQGDNIIVAYPIEIPLAK-AQWSLVIEVAKADAYQAANAMDKAMSAMASSLGS 352

Query: 274 NSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKI 333
             +   VI++ +    +   +R ++ PL  +   + N++S   DLT ++   +  E   +
Sbjct: 353 LLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVESHAELIAL 412

Query: 334 INSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEM 393
               N F+  L+ ++ E+K  + +    +    E+ +  +NSV  QY +++ + +++NEM
Sbjct: 413 GGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTAVNEM 472

Query: 394 VATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQT 453
            AT+ ++A+ + + +  T  +   V  G  ++S     V ++ ++    K  +  +   +
Sbjct: 473 SATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKVAESS 532

Query: 454 QNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIG 513
            NI  IL+ I+ IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA KTQ ST  IG
Sbjct: 533 TNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDEIG 592

Query: 514 SIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQV---AT 570
            +I  LQ     +  ++D+  + A   +   A ++  L +++  V QI ++++QV   AT
Sbjct: 593 KLIEALQREVNSASQIIDQGVDGAQRAV---AQTESALSSLNTIVNQIQEVSSQVTHIAT 649

Query: 571 AAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISK 623
           AA EQS V+EE++ N   I D A  L+ L ++  Q + S   L+  Q   + K
Sbjct: 650 AAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGK 702