Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  196 bits (498), Expect = 2e-54
 Identities = 117/346 (33%), Positives = 180/346 (52%)

Query: 279 AVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFN 338
           A++L ++   ++L   + M+ P+H +   + +I+ G  DLT R+      E + +  +FN
Sbjct: 207 ALVLVAITAVVMLVAAQRMVNPIHNMVQNLEDIAKGEGDLTKRLDVQGSDEIAMLGRAFN 266

Query: 339 IFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSN 398
            FV  LQ I+ +V   + ++                 +     E D + +++ EM AT++
Sbjct: 267 QFVDKLQGIIKDVARATVEVKSGADNISSQTAAMAQQLISHNNETDQVVTAITEMSATAS 326

Query: 399 QIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDV 458
           ++A  T++ +E T      V      V S    V  L+ ++D     I  LN Q+Q I+ 
Sbjct: 327 EVAMSTTQVAEATQAATQDVGNAQECVDSSLHEVSTLMAEIDMAAGHINSLNEQSQKINS 386

Query: 459 ILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHI 518
           +L  I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVRSLA +TQ ST  I  ++  
Sbjct: 387 VLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSE 446

Query: 519 LQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHV 578
           L     L+V  M+ S      ++T S      L  ++ +V  I D++ Q+ATAA EQS V
Sbjct: 447 LHNLVSLAVSSMESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMSTQIATAATEQSSV 506

Query: 579 SEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
           +EEIN N  +I++  + L    N  S  +        + D L+ +F
Sbjct: 507 TEEINRNVFAIQEIVNELLQASNSASDTSQGLANEGRNLDTLVGQF 552