Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  226 bits (577), Expect = 2e-63
 Identities = 171/636 (26%), Positives = 310/636 (48%), Gaps = 26/636 (4%)

Query: 7   LLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESKVDVSKS 66
           +L    S++++I  I  Y   +     LD T+   +   L  + + I+  +   + VSK 
Sbjct: 11  VLATLASVVLSIFLISLYAMSNSREIILDSTLNRELPAVLGEVANDIDAQLLMPITVSKV 70

Query: 67  VIDIYEN---LLEGESPLSKFKDVDVNHLSNVFQLFG-----YADERTGEIITNDPNFKV 118
           + +  E    + +GE   S+     +  L+N+ Q FG          TG   T++  FK 
Sbjct: 71  MANNLEYQAMIRQGEPEASQA--TLIASLANIRQRFGAITAFLVSNTTGRYFTHEGLFKT 128

Query: 119 PTGFDPRTRSWYLNAKKLNTFSLSEPYVDLI-TEKLMVTTSAPIYNKNDLTGVIFFDIPL 177
            +  D R   +Y        + LS    DL  T  L +     I  K   +GV    + L
Sbjct: 129 VSPSDDRDAWFYRFLGSGKDYDLSIDVDDLNQTPTLFINYLVQIEGKP--SGVAGVGLSL 186

Query: 178 DDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKT---- 233
           + + + IK Y   + G +++ D +G+I    ++  +GK L       P ++   +T    
Sbjct: 187 NSLADNIKQYKIGEQGRVYLTDGNGQIKIHGQSQFAGKQLSALGIKDPQALLSQQTFATS 246

Query: 234 -KDKNGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLF 292
             D NGV+  V  +     GW L++ +  D+    I    N + +   ++  +  AI++F
Sbjct: 247 EYDNNGVDTLVASRYIPSIGWYLIAEVPQDELFGAI----NKASWQLALMGLILAAIIMF 302

Query: 293 T----MRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIV 348
           T    +  ++ P  +L D + +I  G  DL++R+ +S   E   +  S+N FV  L   +
Sbjct: 303 TSAWLINRLISPFGELADMLKSIGEGEGDLSLRLDDSRQDETGSMAASYNQFVTYLSKTL 362

Query: 349 SEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEAS 408
             V   +  +           +   + + DQ  +++ +A++++EM  T+ +IA   + A+
Sbjct: 363 QSVSATANDLFQAVERIDNQAKHMEHEINDQVSKIEQVATAIHEMGMTAQEIASSANNAA 422

Query: 409 EITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIAD 468
           E     +  VN+G  +V +   SV ++ E+L  T   +  L     +ID +L+ I  +++
Sbjct: 423 ENAQVADQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDASSIDTVLEVIRGVSE 482

Query: 469 QTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVH 528
           QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA ++  ST++I  II  LQ  +   V+
Sbjct: 483 QTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKLQAKTTEVVN 542

Query: 529 VMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSIS 588
            + +S N + ++   ++ S + L +I++++  + +++ Q+ATA  EQS+V  EIN +  +
Sbjct: 543 AIGQSTNQSQQSQQEASLSGEHLHSIAENIQAMSEMSMQIATATEEQSNVVGEINPHVTA 602

Query: 589 IKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
           I D + + S +  + S      + +    ++L+S+F
Sbjct: 603 IADISRSSSDVVRQTSLDCSDLREMAVQLNELVSRF 638