Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  238 bits (608), Expect = 5e-67
 Identities = 182/642 (28%), Positives = 303/642 (47%), Gaps = 36/642 (5%)

Query: 2   KFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESKV 61
           K  +  ++   ++ + IS+ L+Y Q+    E     + D ++    +   K+     +K 
Sbjct: 5   KSLVASMVTLVALCLLISNWLSYVQI---KEATIARVNDKLTGVTRNESAKVATWFGAKA 61

Query: 62  DVSKSVIDIYENLLEGESPLSKFKDVDVN------HLSNVFQL-FGYADERTGEIITNDP 114
                +   Y         L  ++D  VN       LS V ++ FG+ D       T D 
Sbjct: 62  QAMDELARHYR--------LGSYQDNYVNTARLATDLSGVARIYFGFDDGSAYSTETGDK 113

Query: 115 --NFK-VPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVI 171
             N K +P  +DPRTR WY   K      +++ Y+D  +   +++       KN   GV+
Sbjct: 114 WLNGKAIPGKYDPRTRPWYQQGKATTQLDVTDIYIDDGSGHKVISIL-----KNLGDGVV 168

Query: 172 FFDIPLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLS---- 227
             DI L  + +++ + + +      I D +GK++      +   + F DF    +     
Sbjct: 169 LGDIELTYLHDVVSAID-YPGAVALITDQTGKVLASESPTLVSGSRFSDFGLPQVQQKII 227

Query: 228 -----VSESKTKDKNGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVIL 282
                + E +    + + +   I + +   W L   +D   A + +     +++ ++ I+
Sbjct: 228 GSDEVMQEYRIDGVDKLGFSKAIPLVNGKQWFLFIGLDKSNAYAVVDQALTSALVSSAIM 287

Query: 283 ASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVG 342
                +ILL  + L+ +P+  L   +  +S G+ DLT R+    + +  +I    N F+ 
Sbjct: 288 LLCAISILLGVLYLLYRPILSLKAMVTELSKGNGDLTKRLEIHCEDDLGQISMGINQFIA 347

Query: 343 NLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQ 402
           NLQ+++ EV   S  I+          E   + ++   +E + + +++ EM AT+N +AQ
Sbjct: 348 NLQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEEMSATANDVAQ 407

Query: 403 ITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKA 462
             SE +  T   N Q       V+  TE+V  LV +++ T   I  ++R T NI  +LK 
Sbjct: 408 NGSETASFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQIDRDTINITQVLKV 467

Query: 463 INDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQEN 522
           I DIADQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ+ST  I   +  L++ 
Sbjct: 468 IGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEETLSNLRDA 527

Query: 523 SLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEI 582
           S  ++H M+ +     ET + +      LD I  SV QI D+  Q+ATAA EQS VS EI
Sbjct: 528 SNSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATAAEEQSSVSAEI 587

Query: 583 NSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
             N  +I D A+ L+  G     +  +        + ++ +F
Sbjct: 588 TRNMSAICDMANELARSGESSRNETVNLATANQQLEQIVGQF 629